Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100409817 . G A CCDS6728.1:NM_002486.4:c.655Gct>Act_NP_002477.1:p.219A>T Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ALA A:219 A:219 32.0 0.278 -68.6 137.7 32.0 0.278 0.0 HOH
 3.352
 CB
 O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ALA A:219 A:219 26.0 0.226 -79.4 125.8 26.0 0.226 0.0 HOH
 6.483
 C
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ALA A:219 A:219 26.0 0.226 -73.0 171.6 26.0 0.226 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ALA A:219 A:219 36.0 0.313 -61.0 148.6 36.0 0.313 0.0 HOH
 2.323
 O
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 ALA A:219 A5:219 51.0 0.443 -81.0 122.9 51.0 0.443 0.0
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 ALA A:201 A:219 32.0 0.278 -61.7 136.3 32.0 0.278 0.0
ALA C:201 C:219 33.0 0.287 -61.7 136.4 NA NA NA
ALA F:201 F:219 32.0 0.278 -61.6 135.7 NA NA NA
ALA H:201 I:219 32.0 0.278 -61.7 136.5 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 ALA A:200 C:219 35.0 0.304 -65.3 144.1 35.0 0.304 0.0 HOH
 2.760
 O
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 ALA A:201 A:219 30.0 0.261 -61.8 149.1 30.0 0.261 0.0
ALA C:201 D:219 29.0 0.252 -61.8 149.5 NA NA NA
ALA E:201 G:219 30.0 0.261 -61.3 149.4 NA NA NA
ALA G:201 J:219 30.0 0.261 -61.6 149.5 NA NA NA
ALA I:201 M:219 29.0 0.252 -62.0 149.5 NA NA NA
ALA K:201 P:219 29.0 0.252 -61.5 149.4 NA NA NA
ALA M:201 S:219 31.0 0.27 -61.7 149.5 NA NA NA
ALA O:201 V:219 30.0 0.261 -62.0 149.2 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 ALA A:197 C:219 32.0 0.278 -67.9 149.1 32.0 0.278 0.0 HOH
 2.644
 O
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 ALA A:200 A:219 34.0 0.296 -57.9 148.0 34.0 0.296 0.0 HOH
 2.500
 O
 O
ALA B:200 B:219 32.0 0.278 -59.4 145.1 NA NA NA
ALA C:200 C:219 34.0 0.296 -60.7 147.4 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ALA A:200 C:219 35.0 0.304 -58.8 142.1 35.0 0.304 0.0 HOH
 2.857
 O
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ALA A:200 A:219 33.0 0.287 -67.9 143.5 33.0 0.287 0.0 HOH
 3.564
 N
 O
ALA B:200 B:219 35.0 0.304 -67.9 146.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 ALA A:219 A:219 32.0 0.278 -71.7 133.7