Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100413635 . T A CCDS6728.1:NM_002486.4:c.1039Ttg>Atg_NP_002477.1:p.347L>M Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 LEU A:347 A:347 33.0 0.194 H -48.2 -53.5 33.0 0.194 0.0 HOH
 4.495
 CD2
 O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 LEU A:347 A:347 31.0 0.182 H -42.9 -44.7 31.0 0.182 0.0 HOH
 5.203
 CD2
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 LEU A:347 A:347 31.0 0.182 H -70.0 -35.4 31.0 0.182 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 LEU A:347 A:347 31.0 0.182 H -58.4 -43.1 31.0 0.182 0.0 HOH
 3.346
 CD2
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 LEU A:347 A5:347 62.0 NA H -48.3 -53.5 62.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 LEU A:329 A:347 25.0 0.147 H -59.8 -40.7 25.0 0.147 0.0
LEU C:329 C:347 26.0 0.153 H -59.0 -41.3 NA NA NA
LEU F:329 F:347 26.0 0.153 H -58.8 -41.2 NA NA NA
LEU H:329 I:347 24.0 0.141 H -58.4 -41.4 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 LEU A:328 C:347 31.0 0.182 H -44.9 -43.6 31.0 0.182 0.0 HOH
 3.488
 CD2
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 LEU A:329 A:347 30.0 0.176 H -57.6 -36.0 30.0 0.176 0.0
LEU C:329 D:347 30.0 0.176 H -56.8 -36.6 NA NA NA
LEU E:329 G:347 31.0 0.182 H -57.9 -35.7 NA NA NA
LEU G:329 J:347 32.0 0.188 H -56.7 -36.3 NA NA NA
LEU I:329 M:347 31.0 0.182 H -57.3 -36.4 NA NA NA
LEU K:329 P:347 31.0 0.182 H -57.8 -35.8 NA NA NA
LEU M:329 S:347 31.0 0.182 H -56.8 -36.2 NA NA NA
LEU O:329 V:347 30.0 0.176 H -57.4 -36.1 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 LEU A:325 C:347 32.0 0.188 H -60.6 -39.8 32.0 0.188 0.0 HOH
 3.700
 H
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 LEU A:328 A:347 30.0 0.176 H -44.5 -46.6 30.0 0.176 0.0 HOH
 3.295
 N
 O
LEU B:328 B:347 30.0 0.176 H -55.7 -38.5 NA NA NA
LEU C:328 C:347 26.0 0.153 H -51.8 -44.5 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 LEU A:328 C:347 29.0 0.171 H -41.4 -49.6 29.0 0.171 0.0 HOH
 3.339
 CD2
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 LEU A:328 A:347 29.0 0.171 H -40.6 -47.5 29.0 0.171 0.0 HOH
 3.660
 CD2
 O
LEU B:328 B:347 31.0 0.182 H -45.4 -43.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 LEU A:347 A:347 32.0 0.188 H -56.4 -38.3