Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100417192 . C A CCDS6728.1:NM_002486.4:c.1201Cgt>Agt_NP_002477.1:p.401R>S Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ARG A:401 A:401 51.0 0.227 T -106.8 8.6 51.0 0.227 0.0 HOH
 2.654
 O
 O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ARG A:401 A:401 45.0 0.2 T -92.4 0.6 45.0 0.2 0.0 HOH
 2.762
 NH2
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ARG A:401 A:401 47.0 0.209 T -112.2 28.4 47.0 0.209 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ARG A:401 A:401 42.0 0.187 T -108.2 17.4 42.0 0.187 0.0 HOH
 2.911
 O
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 ARG A:401 A5:401 62.0 NA T -106.8 8.6 62.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 ARG A:383 A:401 47.0 0.209 T -94.8 11.2 47.0 0.209 0.0
ARG C:383 C:401 49.0 0.218 T -95.4 11.7 NA NA NA
ARG F:383 F:401 50.0 0.222 T -94.2 10.0 NA NA NA
ARG H:383 I:401 49.0 0.218 T -94.8 11.1 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 ARG A:382 C:401 46.0 0.204 T -99.5 9.4 46.0 0.204 0.0 HOH
 2.659
 O
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 ARG A:383 A:401 45.0 0.2 T -98.9 14.4 45.0 0.2 0.0
ARG C:383 D:401 43.0 0.191 T -98.7 14.2 NA NA NA
ARG E:383 G:401 43.0 0.191 T -98.6 13.9 NA NA NA
ARG G:383 J:401 44.0 0.196 T -98.6 14.0 NA NA NA
ARG I:383 M:401 43.0 0.191 T -98.7 14.1 NA NA NA
ARG K:383 P:401 43.0 0.191 T -98.6 14.0 NA NA NA
ARG M:383 S:401 43.0 0.191 T -98.5 14.0 NA NA NA
ARG O:383 V:401 45.0 0.2 T -98.8 14.3 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 ARG A:379 C:401 44.0 0.196 T -109.2 15.4 44.0 0.196 0.0 HOH
 1.798
 HH11
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 ARG A:382 A:401 48.0 0.213 T -108.6 10.4 48.0 0.213 0.0 HOH
 2.745
 O
 O
ARG B:382 B:401 49.0 0.218 T -106.5 13.5 NA NA NA
ARG C:382 C:401 47.0 0.209 T -98.4 6.6 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ARG A:382 C:401 48.0 0.213 T -111.0 9.4 48.0 0.213 0.0 HOH
 2.590
 O
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ARG A:382 A:401 51.0 0.227 T -110.5 17.5 51.0 0.227 0.0 HOH
 2.821
 O
 O
ARG B:382 B:401 47.0 0.209 T -112.6 14.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 ARG A:401 A:401 41.0 0.182 T -105.5 11.9