Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100417220 . T A CCDS6728.1:NM_002486.4:c.1229gTa>gAa_NP_002477.1:p.410V>E Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 VAL A:410 A:410 25.0 0.161 H -53.0 -50.2 25.0 0.161 0.0 HOH
 3.316
 CG1
 O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 VAL A:410 A:410 24.0 0.155 H -52.4 -56.5 24.0 0.155 0.0 HOH
 5.998
 O
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 VAL A:410 A:410 24.0 0.155 H -51.5 -34.4 24.0 0.155 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 VAL A:410 A:410 23.0 0.148 H -62.8 -40.6 23.0 0.148 0.0 HOH
 3.188
 CG1
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 VAL A:410 A5:410 47.0 NA H -53.0 -50.3 47.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 VAL A:392 A:410 18.0 0.116 H -64.8 -41.3 18.0 0.116 0.0
VAL C:392 C:410 19.0 0.123 H -65.1 -41.0 NA NA NA
VAL F:392 F:410 19.0 0.123 H -64.8 -41.0 NA NA NA
VAL H:392 I:410 17.0 0.11 H -65.1 -40.6 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 VAL A:391 C:410 22.0 0.142 H -60.6 -40.8 22.0 0.142 0.0 HOH
 3.271
 CG1
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 VAL A:392 A:410 22.0 0.142 H -62.3 -39.2 22.0 0.142 0.0
VAL C:392 D:410 22.0 0.142 H -62.5 -39.3 NA NA NA
VAL E:392 G:410 23.0 0.148 H -62.1 -39.4 NA NA NA
VAL G:392 J:410 22.0 0.142 H -62.4 -39.3 NA NA NA
VAL I:392 M:410 22.0 0.142 H -62.4 -39.4 NA NA NA
VAL K:392 P:410 23.0 0.148 H -62.2 -39.4 NA NA NA
VAL M:392 S:410 22.0 0.142 H -62.3 -39.4 NA NA NA
VAL O:392 V:410 22.0 0.142 H -62.2 -39.2 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 VAL A:388 C:410 24.0 0.155 H -58.5 -39.6 24.0 0.155 0.0 HOH
 2.838
 HG11
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 VAL A:391 A:410 22.0 0.142 H -63.9 -41.0 22.0 0.142 0.0 HOH
 3.581
 CG1
 O
VAL B:391 B:410 23.0 0.148 H -58.4 -45.5 NA NA NA
VAL C:391 C:410 23.0 0.148 H -60.9 -41.5 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 VAL A:391 C:410 22.0 0.142 H -61.2 -40.8 22.0 0.142 0.0 HOH
 3.498
 CG1
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 VAL A:391 A:410 26.0 0.168 H -59.2 -41.9 26.0 0.168 0.0 HOH
 3.462
 CG1
 O
VAL B:391 B:410 25.0 0.161 H -59.1 -40.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 VAL A:410 A:410 22.0 0.142 H -58.3 -43.5