Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100417988 . A C CCDS6728.1:NM_002486.4:c.1240Att>Ctt_NP_002477.1:p.414I>L Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ILE A:414 A:414 1.0 0.006 H -57.3 -56.4 1.0 0.006 0.0 GOL
HOH
 9.956
4.002
 CG2
CD1
 O2
O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ILE A:414 A:414 2.0 0.011 H -56.4 -43.0 2.0 0.011 0.0 HOH
 2.482
 O
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ILE A:414 A:414 6.0 0.034 H -64.1 -44.1 6.0 0.034 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ILE A:414 A:414 4.0 0.023 H -64.8 -45.6 4.0 0.023 0.0 HOH
 3.648
 CD1
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 ILE A:414 A5:414 26.0 NA H -57.3 -56.4 26.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 ILE A:396 A:414 1.0 0.006 H -59.1 -44.9 1.0 0.006 0.0
ILE C:396 C:414 1.0 0.006 H -59.1 -44.8 NA NA NA
ILE F:396 F:414 1.0 0.006 H -59.2 -45.0 NA NA NA
ILE H:396 I:414 0.0 0.0 H -59.1 -44.9 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 ILE A:395 C:414 2.0 0.011 H -58.8 -50.6 2.0 0.011 0.0 HOH
 3.494
 CD1
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 ILE A:396 A:414 2.0 0.011 H -54.3 -50.6 2.0 0.011 0.0
ILE C:396 D:414 2.0 0.011 H -54.2 -50.6 NA NA NA
ILE E:396 G:414 2.0 0.011 H -54.2 -50.8 NA NA NA
ILE G:396 J:414 2.0 0.011 H -54.2 -50.7 NA NA NA
ILE I:396 M:414 2.0 0.011 H -54.1 -50.7 NA NA NA
ILE K:396 P:414 2.0 0.011 H -54.2 -50.8 NA NA NA
ILE M:396 S:414 2.0 0.011 H -54.1 -50.7 NA NA NA
ILE O:396 V:414 2.0 0.011 H -54.3 -50.6 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 ILE A:392 C:414 3.0 0.017 H -63.6 -49.2 3.0 0.017 0.0 HOH
 2.661
 HD11
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 ILE A:395 A:414 1.0 0.006 H -58.1 -49.3 1.0 0.006 0.0 HOH
 3.477
 CD1
 O
ILE B:395 B:414 1.0 0.006 H -61.7 -47.2 NA NA NA
ILE C:395 C:414 1.0 0.006 H -55.7 -49.6 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ILE A:395 C:414 2.0 0.011 H -53.1 -47.1 2.0 0.011 0.0 HOH
 3.927
 CD1
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ILE A:395 A:414 2.0 0.011 H -55.8 -53.8 2.0 0.011 0.0 HOH
 4.026
 CD1
 O
ILE B:395 B:414 2.0 0.011 H -63.6 -44.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 ILE A:414 A:414 5.0 0.029 H -56.7 -49.7