Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100418331 . C A CCDS6728.1:NM_002486.4:c.1337cCg>cAg_NP_002477.1:p.446P>Q Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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label_comp_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 PRO A:446 A:446 2.0 0.014 H -60.9 -40.3 2.0 0.014 0.0 GOL
HOH
 7.476
3.578
 O
CB
 C3
O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 PRO A:446 A:446 2.0 0.014 H -60.1 -37.3 2.0 0.014 0.0 HOH
 7.189
 O
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 PRO A:446 A:446 2.0 0.014 H -57.1 -45.6 2.0 0.014 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 PRO A:446 A:446 3.0 0.021 H -65.3 -32.0 3.0 0.021 0.0 HOH
 3.612
 CD
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 PRO A:446 A5:446 19.0 0.131 H -60.9 -40.3 19.0 0.131 0.0
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 PRO A:428 A:446 4.0 0.028 H -65.2 -34.7 4.0 0.028 0.0
PRO C:428 C:446 4.0 0.028 H -65.1 -34.7 NA NA NA
PRO F:428 F:446 3.0 0.021 H -65.0 -34.7 NA NA NA
PRO H:428 I:446 4.0 0.028 H -65.0 -35.0 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 PRO A:427 C:446 3.0 0.021 H -64.6 -32.5 3.0 0.021 0.0 HOH
 3.484
 CB
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 PRO A:428 A:446 2.0 0.014 H -67.4 -30.9 2.0 0.014 0.0
PRO C:428 D:446 2.0 0.014 H -67.0 -31.1 NA NA NA
PRO E:428 G:446 2.0 0.014 H -67.4 -30.8 NA NA NA
PRO G:428 J:446 2.0 0.014 H -67.1 -31.1 NA NA NA
PRO I:428 M:446 2.0 0.014 H -67.1 -31.1 NA NA NA
PRO K:428 P:446 2.0 0.014 H -67.5 -30.9 NA NA NA
PRO M:428 S:446 2.0 0.014 H -67.0 -31.2 NA NA NA
PRO O:428 V:446 2.0 0.014 H -67.5 -30.8 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 PRO A:424 C:446 1.0 0.007 H -60.8 -33.7 1.0 0.007 0.0 HOH
 3.266
 HD2
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 PRO A:427 A:446 4.0 0.028 H -64.0 -31.0 4.0 0.028 0.0 HOH
 3.422
 CB
 O
PRO B:427 B:446 4.0 0.028 H -60.2 -34.6 NA NA NA
PRO C:427 C:446 4.0 0.028 H -60.3 -42.1 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 PRO A:427 C:446 4.0 0.028 H -62.8 -37.0 4.0 0.028 0.0 HOH
 6.401
 C
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 PRO A:427 A:446 3.0 0.021 H -63.6 -29.3 3.0 0.021 0.0 HOH
 3.615
 CB
 O
PRO B:427 B:446 4.0 0.028 H -61.0 -28.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 PRO A:446 A:446 3.0 0.021 H -64.4 -35.9