Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100418343 . G A CCDS6728.1:NM_002486.4:c.1349aGa>aAa_NP_002477.1:p.450R>K Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ARG A:450 A:450 66.0 0.293 H -57.1 -47.2 66.0 0.293 0.0 GOL
HOH
 3.297
2.710
 NE
O
 O3
O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ARG A:450 A:450 67.0 0.298 H -59.2 -70.4 67.0 0.298 0.0 HOH
 2.683
 O
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ARG A:450 A:450 64.0 0.284 H -67.5 -53.2 64.0 0.284 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ARG A:450 A:450 69.0 0.307 H -60.9 -49.4 69.0 0.307 0.0 HOH
 2.763
 O
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 ARG A:450 A5:450 37.0 NA H -57.1 -47.1 37.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 ARG A:432 A:450 64.0 0.284 H -52.7 -50.6 64.0 0.284 0.0
ARG C:432 C:450 63.0 0.28 H -53.4 -50.0 NA NA NA
ARG F:432 F:450 64.0 0.284 H -52.8 -50.6 NA NA NA
ARG H:432 I:450 63.0 0.28 H -53.2 -50.3 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 ARG A:431 C:450 76.0 0.338 H -61.6 -44.1 76.0 0.338 0.0 HOH
 2.778
 O
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 ARG A:432 A:450 73.0 0.324 H -58.4 -49.3 73.0 0.324 0.0
ARG C:432 D:450 73.0 0.324 H -58.3 -49.0 NA NA NA
ARG E:432 G:450 73.0 0.324 H -58.3 -49.2 NA NA NA
ARG G:432 J:450 73.0 0.324 H -58.4 -48.9 NA NA NA
ARG I:432 M:450 74.0 0.329 H -58.4 -49.0 NA NA NA
ARG K:432 P:450 73.0 0.324 H -58.3 -49.2 NA NA NA
ARG M:432 S:450 72.0 0.32 H -58.4 -48.9 NA NA NA
ARG O:432 V:450 72.0 0.32 H -58.3 -49.4 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 ARG A:428 C:450 74.0 0.329 H -59.0 -48.8 74.0 0.329 0.0 HOH
 2.158
 HE
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 ARG A:431 A:450 74.0 0.329 H -62.4 -43.2 74.0 0.329 0.0 HOH
 2.644
 O
 O
ARG B:431 B:450 76.0 0.338 H -58.1 -46.3 NA NA NA
ARG C:431 C:450 72.0 0.32 H -56.2 -50.0 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ARG A:431 C:450 79.0 0.351 H -61.4 -40.3 79.0 0.351 0.0 HOH
 3.000
 NE
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ARG A:431 A:450 82.0 0.364 H -59.7 -50.5 82.0 0.364 0.0 HOH
 3.035
 O
 O
ARG B:431 B:450 77.0 0.342 H -67.1 -41.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 ARG A:450 A:450 73.0 0.324 H -59.6 -46.1