Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100418356 . A C CCDS6728.1:NM_002486.4:c.1362gaA>gaC_NP_002477.1:p.454E>D Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 GLU A:454 A:454 12.0 0.063 H -60.6 -44.6 12.0 0.063 0.0 GOL
HOH
 3.215
2.666
 OE1
OE2
 C2
O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 GLU A:454 A:454 13.0 0.068 H -50.7 -39.0 13.0 0.068 0.0 GOL
HOH
 8.534
3.243
 O
N
 O2
O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 GLU A:454 A:454 13.0 0.068 H -79.0 -36.7 13.0 0.068 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 GLU A:454 A:454 16.0 0.084 H -62.2 -50.5 16.0 0.084 0.0 HOH
 2.769
 OE1
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 GLU A:454 A5:454 45.0 NA H -60.6 -44.6 45.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 GLU A:436 A:454 13.0 0.068 H -62.5 -45.0 13.0 0.068 0.0
GLU C:436 C:454 14.0 0.074 H -62.6 -44.9 NA NA NA
GLU F:436 F:454 13.0 0.068 H -62.4 -45.2 NA NA NA
GLU H:436 I:454 14.0 0.074 H -63.4 -44.7 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 GLU A:435 C:454 19.0 0.1 H -67.1 -45.4 19.0 0.1 0.0 HOH
 2.635
 OE2
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 GLU A:436 A:454 13.0 0.068 H -59.3 -42.5 13.0 0.068 0.0
GLU C:436 D:454 13.0 0.068 H -59.6 -42.3 NA NA NA
GLU E:436 G:454 13.0 0.068 H -59.4 -42.5 NA NA NA
GLU G:436 J:454 13.0 0.068 H -59.5 -42.5 NA NA NA
GLU I:436 M:454 13.0 0.068 H -59.6 -42.3 NA NA NA
GLU K:436 P:454 13.0 0.068 H -59.4 -42.6 NA NA NA
GLU M:436 S:454 13.0 0.068 H -59.6 -42.4 NA NA NA
GLU O:436 V:454 13.0 0.068 H -59.3 -42.5 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 GLU A:432 C:454 4.0 0.021 H -64.2 -41.5 4.0 0.021 0.0 HOH
 2.890
 OE1
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 GLU A:435 A:454 19.0 0.1 H -65.7 -41.6 19.0 0.1 0.0 HOH
 2.537
 OE2
 O
GLU B:435 B:454 17.0 0.089 H -63.4 -46.9 NA NA NA
GLU C:435 C:454 21.0 0.111 H -64.7 -43.8 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 GLU A:435 C:454 19.0 0.1 H -64.7 -41.3 19.0 0.1 0.0 HOH
 2.638
 OE1
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 GLU A:435 A:454 18.0 0.095 H -63.9 -44.2 18.0 0.095 0.0 HOH
 3.024
 OE1
 O
GLU B:435 B:454 22.0 0.116 H -65.7 -39.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 GLU A:454 A:454 11.0 0.058 H -60.2 -44.9