Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100425320 . C A CCDS6728.1:NM_002486.4:c.1788aaC>aaA_NP_002477.1:p.596N>K Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ASN A:596 A:596 52.0 0.325 T -98.2 0.1 52.0 0.325 0.0 GOL
HOH
 6.104
2.666
 O
O
 O1
O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ASN A:596 A:596 48.0 0.3 T -113.1 16.6 48.0 0.3 0.0 HOH
 3.567
 OD1
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ASN A:596 A:596 54.0 0.338 T -111.7 -17.2 54.0 0.338 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ASN A:596 A:596 53.0 0.331 T -74.7 -2.2 53.0 0.331 0.0 HOH
 2.719
 O
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 ASN A:596 A5:596 37.0 NA T -98.2 0.1 37.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 ASN A:578 A:596 52.0 0.325 T -86.9 -8.2 52.0 0.325 0.0
ASN C:578 C:596 53.0 0.331 T -87.0 -7.9 NA NA NA
ASN F:578 F:596 55.0 0.344 T -86.9 -8.0 NA NA NA
ASN H:578 I:596 50.0 0.312 T -86.6 -8.9 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 ASN A:577 C:596 49.0 0.306 T -91.6 2.1 49.0 0.306 0.0 HOH
 2.810
 O
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 ASN A:578 A:596 49.0 0.306 T -82.8 -16.0 49.0 0.306 0.0
ASN C:578 D:596 47.0 0.294 T -82.9 -16.1 NA NA NA
ASN E:578 G:596 47.0 0.294 T -83.4 -16.1 NA NA NA
ASN G:578 J:596 46.0 0.287 T -82.7 -16.3 NA NA NA
ASN I:578 M:596 45.0 0.281 T -82.8 -16.1 NA NA NA
ASN K:578 P:596 49.0 0.306 T -83.3 -16.1 NA NA NA
ASN M:578 S:596 46.0 0.287 T -82.7 -16.2 NA NA NA
ASN O:578 V:596 45.0 0.281 T -82.7 -16.0 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 ASN A:574 C:596 41.0 0.256 T -88.6 1.4 41.0 0.256 0.0 HOH
 2.580
 HD21
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 ASN A:577 A:596 45.0 0.281 T -80.3 -3.7 45.0 0.281 0.0 HOH
 2.744
 O
 O
ASN B:577 B:596 44.0 0.275 T -79.6 -6.1 NA NA NA
ASN C:577 C:596 46.0 0.287 T -82.0 -5.0 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ASN A:577 C:596 49.0 0.306 T -105.6 1.5 49.0 0.306 0.0 HOH
 2.860
 N
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ASN A:577 A:596 46.0 0.287 T -92.0 -7.3 46.0 0.287 0.0 HOH
 2.893
 N
 O
ASN B:577 B:596 46.0 0.287 T -87.9 -9.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 ASN A:596 A:596 54.0 0.338 T -81.2 -10.5