Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100426712 . C A CCDS6728.1:NM_002486.4:c.1888Cgt>Agt_NP_002477.1:p.630R>S Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ARG A:630 A:630 211.0 0.938 T -77.7 -19.3 211.0 0.938 0.0 GOL
GOL
GOL
HOH
 8.566
5.935
7.474
3.135
 N
N
O
CB
 O2
O2
O3
O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ARG A:630 A:630 214.0 0.951 T -77.4 -10.2 214.0 0.951 0.0 HOH
 3.447
 CD
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ARG A:630 A:630 186.0 0.827 S -88.7 -42.6 186.0 0.827 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ARG A:630 A:630 220.0 0.978 G -67.9 -24.5 220.0 0.978 0.0 HOH
 3.233
 O
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 ARG A:630 A5:630 110.0 NA T -77.7 -19.3 110.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 ARG A:612 A:630 220.0 0.978 G -74.8 -27.9 220.0 0.978 0.0
ARG C:612 C:630 226.0 1.0 G -75.4 -27.6 NA NA NA
ARG F:612 F:630 225.0 1.0 G -75.0 -27.2 NA NA NA
ARG H:612 I:630 216.0 0.96 G -75.2 -27.8 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 ARG A:611 C:630 220.0 0.978 T -80.3 -11.7 220.0 0.978 0.0 HOH
 2.849
 O
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 ARG A:612 A:630 201.0 0.893 T -67.7 -35.4 201.0 0.893 0.0
ARG C:612 D:630 210.0 0.933 T -67.3 -36.0 NA NA NA
ARG E:612 G:630 203.0 0.902 T -67.5 -35.4 NA NA NA
ARG G:612 J:630 211.0 0.938 T -67.3 -36.0 NA NA NA
ARG I:612 M:630 207.0 0.92 T -67.3 -35.9 NA NA NA
ARG K:612 P:630 203.0 0.902 T -67.5 -35.4 NA NA NA
ARG M:612 S:630 214.0 0.951 T -67.2 -36.0 NA NA NA
ARG O:612 V:630 201.0 0.893 T -67.7 -35.5 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 ARG A:608 C:630 213.0 0.947 G -68.4 -32.5 213.0 0.947 0.0 HOH
 3.864
 O
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 ARG A:611 A:630 233.0 1.0 T -73.9 -17.5 233.0 1.0 0.0 HOH
 2.903
 O
 O
ARG B:611 B:630 223.0 0.991 G -77.7 -19.5 NA NA NA
ARG C:611 C:630 230.0 1.0 T -76.8 -13.3 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ARG A:611 C:630 209.0 0.929 T -77.5 -25.9 209.0 0.929 0.0 HOH
 5.507
 N
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ARG A:611 A:630 210.0 0.933 T -78.3 -14.1 210.0 0.933 0.0 HOH
 5.125
 N
 O
ARG B:611 B:630 225.0 1.0 T -78.4 -13.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 ARG A:630 A:630 218.0 0.969 T -72.3 -26.0