Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100431908 . C A CCDS6728.1:NM_002486.4:c.2179Cga>Aga_NP_002477.1:p.727R>R Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ARG A:727 A:727 111.0 0.493 H -45.5 -49.2 111.0 0.493 0.0 GOL
GOL
HOH
 3.149
8.315
3.992
 NH2
NH1
NH1
 O3
C3
O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ARG A:727 A:727 123.0 0.547 H -70.1 -53.0 123.0 0.547 0.0 HOH
 2.451
 NH1
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ARG A:727 A:727 104.0 0.462 H -74.6 -64.7 104.0 0.462 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ARG A:727 A:727 100.0 0.444 H -59.4 -47.0 100.0 0.444 0.0 HOH
 3.098
 NH2
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 ARG A:727 A5:727 62.0 NA H -45.5 -49.2 62.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 ARG A:709 A:727 123.0 0.547 H -56.9 -36.8 123.0 0.547 0.0
ARG C:709 C:727 120.0 0.533 H -56.1 -37.2 NA NA NA
ARG F:709 F:727 117.0 0.52 H -57.0 -36.3 NA NA NA
ARG H:709 I:727 123.0 0.547 H -57.1 -36.4 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 ARG A:708 C:727 118.0 0.524 H -61.3 -45.8 118.0 0.524 0.0 HOH
 2.619
 NH2
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 ARG A:709 A:727 129.0 0.573 H -65.8 -24.0 129.0 0.573 0.0
ARG C:709 D:727 135.0 0.6 H -65.7 -24.1 NA NA NA
ARG E:709 G:727 131.0 0.582 H -65.7 -24.2 NA NA NA
ARG G:709 J:727 134.0 0.596 H -65.7 -24.1 NA NA NA
ARG I:709 M:727 134.0 0.596 H -65.7 -24.1 NA NA NA
ARG K:709 P:727 130.0 0.578 H -65.8 -24.1 NA NA NA
ARG M:709 S:727 129.0 0.573 H -65.8 -24.1 NA NA NA
ARG O:709 V:727 131.0 0.582 H -65.9 -24.0 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 ARG A:705 C:727 125.0 0.556 H -59.5 -30.3 125.0 0.556 0.0 HOH
 3.288
 HH22
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 ARG A:694 A:727 124.0 0.551 H -64.6 -32.4 124.0 0.551 0.0 HOH
 3.752
 NH2
 O
ARG B:694 B:727 120.0 0.533 H -57.4 -48.6 NA NA NA
ARG C:694 C:727 115.0 0.511 H -65.2 -46.2 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ARG A:660 C:727 116.0 0.516 H -61.1 -27.8 116.0 0.516 0.0 HOH
 2.968
 NH2
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ARG A:660 A:727 128.0 0.569 H -68.2 -32.5 128.0 0.569 0.0 HOH
 2.993
 NH2
 O
ARG B:660 B:727 121.0 0.538 H -61.3 -33.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 ARG A:727 A:727 109.0 0.484 H -63.8 -44.2