Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 130911934 . G A CCDS6892.1:NM_005564.3:c.130Gac>Aac_NP_005555.2:p.44D>N Homo sapiens lipocalin 2 (LCN2), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hwe 1 P80188 99.49 4e-148 X-RAY
2010-06-02 ASP A:44 A:24 49.0 0.327 T -59.5 -41.8 49.0 0.327 0.0
ASP B:44 B:24 63.0 0.42 H -69.9 -43.3 NA NA NA
ASP C:44 C:24 59.0 0.393 T -61.9 -33.0 NA NA NA
3hwf 1 P80188 99.49 4e-148 X-RAY
2010-06-02 ASP A:44 A:24 43.0 0.287 T -66.3 -27.5 43.0 0.287 0.0
ASP B:44 B:24 63.0 0.42 H -64.0 -34.4 NA NA NA
ASP C:44 C:24 42.0 0.28 H -57.0 -37.5 NA NA NA
3hwg 1 P80188 99.49 4e-148 X-RAY
2010-06-02 ASP A:44 A:24 45.0 0.3 T -65.1 -32.8 45.0 0.3 0.0 HOH
2.677
OD1
O
ASP B:44 B:24 61.0 0.407 H -67.5 -32.1 NA NA NA
ASP C:44 C:24 49.0 0.327 H -60.3 -38.0 NA NA NA
3u0d 1 P80188 99.49 4e-148 X-RAY
2011-10-12 ASP A:44 A:24 50.0 0.333 T -65.1 -27.8 50.0 0.333 0.0 HOH
2.370
OD2
O
ASP B:44 B:24 52.0 0.347 H -68.9 -28.4 NA NA NA
ASP C:44 C:24 45.0 0.3 H -66.8 -22.4 NA NA NA
ASP D:44 D:24 43.0 0.287 T -49.7 -40.4 NA NA NA
3cbc 1 P80188 98.99 1e-147 X-RAY
2008-09-09 ASP A:44 A:24 47.0 0.313 T -65.1 -34.6 NA NA NA
ASP B:44 B:24 39.0 0.26 H -63.9 -34.7 39.0 0.26 0.0 HOH
2.925
N
O
ASP C:44 C:24 55.0 0.367 T -64.7 -35.7 NA NA NA
3cmp 1 P80188 98.99 3e-147 X-RAY
2009-05-12 ASP A:44 A:24 46.0 0.307 T -57.0 -38.2 46.0 0.307 0.0 HOH
2.628
N
O
ASP B:44 B:24 65.0 0.433 H -73.3 -38.5 NA NA NA
ASP C:44 C:24 51.0 0.34 H -61.4 -39.5 NA NA NA
3i0a 1 P80188 98.99 3e-147 X-RAY
2010-06-09 ASP A:44 A:24 44.0 0.293 H -67.2 -39.4 44.0 0.293 0.0
ASP B:44 B:24 38.0 NA H -56.0 -44.1 NA NA NA
ASP C:44 C:24 53.0 0.353 H -63.8 -39.6 NA NA NA
3hwd 1 P80188 98.48 1e-146 X-RAY
2010-06-02 ASP A:44 A:24 48.0 0.32 T -59.5 -40.0 48.0 0.32 0.0 HOH
2.977
OD1
O
ASP B:44 B:24 54.0 0.36 H -67.6 -39.6 NA NA NA
ASP C:44 C:24 45.0 0.3 T -60.5 -38.9 NA NA NA
3by0 1 P80188 98.48 9e-146 X-RAY
2008-09-09 ASP A:44 A:24 44.0 0.293 T -66.2 -34.2 44.0 0.293 0.0 HOH
8.923
N
O
ASP B:44 B:24 70.0 0.467 H -67.2 -33.4 NA NA NA
ASP C:44 C:24 49.0 0.327 H -59.9 -39.1 NA NA NA
1dfv 1 P80188 100.0 2e-132 X-RAY
2000-03-06 ASP A:24 A:24 46.0 0.307 T -59.0 -22.3 46.0 0.307 0.0 HOH
2.850
N
O
ASP B:24 B:24 55.0 0.367 T -54.8 -39.4 NA NA NA
1l6m 1 P80188 98.88 3e-132 X-RAY
2003-03-11 ASP A:26 A:24 48.0 0.32 T -66.8 -28.2 48.0 0.32 0.0 HOH
2.747
OD2
O
ASP B:26 B:24 43.0 0.287 H -60.0 -32.9 NA NA NA
ASP C:26 C:24 52.0 0.347 H -61.0 -29.4 NA NA NA
4k19 1 P80188 98.88 3e-132 X-RAY
2013-07-31 ASP A:26 A:24 43.0 0.287 T -63.8 -30.1 43.0 0.287 0.0 HOH
6.927
N
O
ASP B:26 B:24 76.0 0.507 H -66.7 -37.6 NA NA NA
ASP C:26 C:24 49.0 0.327 H -57.4 -39.6 NA NA NA
4zfx 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ASP A:26 A:24 47.0 0.313 H -65.8 -37.3 47.0 0.313 0.0
ASP B:26 B:24 50.0 0.333 T -65.2 -37.3 50.0 0.333 0.0
ASP C:26 C:24 49.0 0.327 T -67.5 -36.8 49.0 0.327 0.0 HOH
2.501
OD2
O
4zhc 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ASP A:26 A:24 50.0 0.333 T -67.6 -33.3 50.0 0.333 0.0 HOH
6.573
CB
O
ASP B:26 B:24 49.0 0.327 T -68.6 -32.6 NA NA NA
ASP C:26 C:24 48.0 0.32 T -68.0 -32.4 NA NA NA
4zhd 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ASP A:26 A:24 52.0 0.347 T -67.1 -35.0 52.0 0.347 0.0 HOH
6.473
CB
O
ASP B:26 B:24 47.0 0.313 H -66.8 -33.6 NA NA NA
ASP C:26 C:24 47.0 0.313 T -67.2 -31.8 NA NA NA
4zhf 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ASP A:26 A:24 47.0 0.313 T -63.5 -34.9 47.0 0.313 0.0 HOH
2.726
OD2
O
ASP B:26 B:24 53.0 0.353 T -63.4 -35.0 NA NA NA
ASP C:26 C:24 53.0 0.353 T -64.6 -34.4 NA NA NA
ASP D:26 D:24 47.0 0.313 T -62.6 -36.4 NA NA NA
ASP E:26 E:24 45.0 0.3 H -63.5 -35.3 NA NA NA
ASP F:26 F:24 52.0 0.347 H -63.3 -33.9 NA NA NA
4zhg 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ASP A:26 A:24 48.0 0.32 T -67.1 -35.6 48.0 0.32 0.0 HOH
2.641
OD2
O
ASP B:26 B:24 50.0 0.333 H -67.4 -34.2 NA NA NA
ASP C:26 C:24 52.0 0.347 H -68.5 -33.3 NA NA NA
ASP D:26 D:24 49.0 0.327 T -64.5 -36.5 NA NA NA
ASP E:26 E:24 44.0 0.293 H -68.0 -33.8 NA NA NA
ASP F:26 F:24 50.0 0.333 H -68.8 -33.5 NA NA NA
4zhh 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ASP A:26 A:24 50.0 0.333 T -64.8 -32.1 50.0 0.333 0.0 HOH
2.574
OD1
O
ASP B:26 B:24 48.0 0.32 T -65.6 -32.0 NA NA NA
ASP C:26 C:24 46.0 0.307 H -67.1 -30.6 NA NA NA
ASP D:26 D:24 49.0 0.327 T -64.0 -33.7 NA NA NA
ASP E:26 E:24 44.0 0.293 H -65.4 -31.9 NA NA NA
ASP F:26 F:24 50.0 0.333 H -65.0 -32.1 NA NA NA
5khp 1 P80188 98.88 3e-132 X-RAY
2017-04-26 ASP A:26 A:24 46.0 0.307 T -69.4 -32.8 46.0 0.307 0.0 HOH
7.638
N
O
ASP B:26 B:24 49.0 0.327 T -68.4 -33.0 NA NA NA
ASP C:26 C:24 47.0 0.313 T -72.5 -32.1 NA NA NA
5kic 1 P80188 98.88 3e-132 X-RAY
2017-04-26 ASP A:26 A:24 43.0 0.287 H -54.7 -37.1 43.0 0.287 0.0 HOH
2.782
N
O
ASP B:26 B:24 49.0 0.327 H -53.7 -37.0 NA NA NA
ASP C:26 C:24 49.0 0.327 H -56.3 -37.2 NA NA NA
5kid 1 P80188 98.88 3e-132 X-RAY
2017-04-26 ASP A:26 A:24 48.0 0.32 H -65.2 -38.8 48.0 0.32 0.0 SO4
HOH
8.003
6.054
C
N
O2
O
ASP B:26 B:24 52.0 0.347 H -64.7 -39.1 NA NA NA
ASP C:26 C:24 49.0 0.327 H -65.8 -37.7 NA NA NA
3tzs 1 P80188 98.88 4e-132 X-RAY
2011-10-12 ASP A:25 A:24 52.0 0.347 G -60.0 -39.0 52.0 0.347 0.0 PHU
HOH
7.900
2.714
N
N
C6
O
ASP B:25 B:24 60.0 0.4 T -56.5 -41.0 NA NA NA
ASP C:25 C:24 58.0 0.387 H -60.8 -40.0 NA NA NA
1x71 1 P80188 99.44 5e-132 X-RAY
2005-01-18 ASP A:24 A:24 47.0 0.313 H -51.6 -40.9 47.0 0.313 0.0 HOH
2.692
N
O
ASP B:24 B:24 62.0 0.413 H -52.8 -37.1 NA NA NA
ASP C:24 C:24 40.0 0.267 H -56.1 -37.0 NA NA NA
1x89 1 P80188 99.44 5e-132 X-RAY
2005-01-25 ASP A:24 A:24 49.0 0.327 H -57.7 -37.9 49.0 0.327 0.0 HOH
2.814
N
O
ASP B:24 B:24 70.0 0.467 H -46.5 -42.6 NA NA NA
ASP C:24 C:24 45.0 0.3 H -56.9 -37.3 NA NA NA
1x8u 1 P80188 99.44 5e-132 X-RAY
2005-01-25 ASP A:24 A:24 49.0 0.327 H -59.5 -36.1 49.0 0.327 0.0 HOH
2.643
N
O
ASP B:24 B:24 48.0 0.32 H -46.1 -43.9 NA NA NA
ASP C:24 C:24 44.0 0.293 H -58.1 -33.7 NA NA NA
3fw4 1 P80188 99.44 5e-132 X-RAY
2010-05-05 ASP A:24 A:24 46.0 0.307 T -63.7 -31.0 46.0 0.307 0.0 HOH
3.222
OD1
O
ASP B:24 B:24 82.0 0.547 -169.4 -59.8 NA NA NA
ASP C:24 C:24 48.0 0.32 H -62.7 -34.3 NA NA NA
3fw5 1 P80188 99.44 5e-132 X-RAY
2010-05-05 ASP A:24 A:24 45.0 0.3 T -65.4 -37.5 45.0 0.3 0.0 HOH
3.948
CB
O
ASP B:24 B:24 69.0 0.46 H -66.4 -31.4 NA NA NA
ASP C:24 C:24 47.0 0.313 H -61.7 -35.1 NA NA NA
3k3l 1 P80188 99.44 5e-132 X-RAY
2010-08-18 ASP A:24 A:24 40.0 0.267 H -59.7 -34.9 40.0 0.267 0.0
ASP B:24 B:24 101.0 NA T -65.2 -32.7 NA NA NA
ASP C:24 C:24 43.0 0.287 H -61.4 -34.3 NA NA NA
3pec 1 P80188 99.44 5e-132 X-RAY
2011-10-05 ASP A:24 A:24 42.0 0.28 T -61.8 -36.5 42.0 0.28 0.0 HOH
2.661
OD1
O
ASP B:24 B:24 59.0 0.393 H -70.2 -37.6 NA NA NA
ASP C:24 C:24 47.0 0.313 H -63.9 -32.8 NA NA NA
3ped 1 P80188 99.44 5e-132 X-RAY
2011-10-05 ASP A:24 A:24 40.0 0.267 H -65.3 -32.9 40.0 0.267 0.0 HOH
2.771
OD2
O
ASP B:24 B:24 45.0 0.3 H -61.5 -38.9 NA NA NA
ASP C:24 C:24 58.0 0.387 H -62.3 -32.7 NA NA NA
3tf6 1 P80188 98.88 5e-132 X-RAY
2011-09-07 ASP A:25 A:24 47.0 0.313 T -65.3 -34.4 47.0 0.313 0.0 HOH
7.934
OD2
O
ASP B:25 B:24 60.0 0.4 T -64.1 -34.1 NA NA NA
ASP C:25 C:24 57.0 0.38 T -63.5 -34.7 NA NA NA
6o5d 1 P80188 99.43 7e-129 X-RAY
2019-09-11 ASP A:20 A:24 46.0 0.307 H -63.1 -34.6 46.0 0.307 0.0
ASP B:20 B:24 32.0 NA H -63.6 -34.8 NA NA NA
ASP C:20 C:24 46.0 0.307 H -64.5 -33.4 NA NA NA
5mhh 1 P80188 96.63 1e-127 X-RAY
2017-10-11 ASP A:24 A:24 44.0 0.293 H -66.9 -36.6 44.0 0.293 0.0 SO4
HOH
7.901
2.769
N
OD2
O3
O
6qmu 1 P80188 96.63 1e-127 X-RAY
2019-08-28 ASP A:24 A:24 47.0 0.313 T -63.5 -35.0 47.0 0.313 0.0 HOH
2.593
OD2
O
ASP B:24 B:24 50.0 0.333 T -63.9 -36.4 NA NA NA
3t1d 1 P80188 97.78 1e-120 X-RAY
2011-08-17 ASP A:44 A:24 60.0 0.4 H -61.9 -34.5 60.0 0.4 0.0 HOH
2.683
OD2
O
ASP B:44 B:24 48.0 0.32 H -61.5 -37.8 NA NA NA
ASP C:44 C:24 50.0 0.333 H -61.6 -35.0 NA NA NA
3dsz 1 ? 91.57 4e-120 X-RAY
2009-05-19 ASP A:24 A:24 51.0 0.34 H -59.7 -34.0 51.0 0.34 0.0 HOH
2.728
OD2
O
ASP B:24 B:24 39.0 0.26 H -63.1 -33.7 NA NA NA
3dtq 1 P80188 91.57 4e-120 X-RAY
2009-05-12 ASP A:24 A:24 48.0 0.32 T -63.1 -34.1 48.0 0.32 0.0 HOH
2.663
OD2
O
ASP B:24 B:24 45.0 0.3 H -55.0 -34.6 NA NA NA
ASP C:24 C:24 40.0 0.267 T -59.1 -26.8 NA NA NA
5n47 1 P80188 90.45 6e-118 X-RAY
2018-02-14 ASP A:24 A:24 47.0 0.313 H -60.6 -34.7 47.0 0.313 0.0
ASP C:24 C:24 49.0 0.327 H -61.6 -40.5 NA NA NA
ASP E:24 E:24 47.0 0.313 H -55.7 -37.3 NA NA NA
1qqs 1 P80188 97.7 4e-116 X-RAY
2000-04-21 ASP A:21 A:24 66.0 0.44 H -48.0 -85.5 66.0 0.44 0.0 HOH
2.881
OD1
O
5jr8 1 P80188 94.38 3e-115 X-RAY
2016-09-28 ASP A:24 A:24 50.0 0.333 H -62.1 -43.6 50.0 0.333 0.0 HOH
2.839
OD2
O
ASP B:24 B:24 49.0 0.327 H -60.9 -43.6 NA NA NA
4mvl 1 P80188 89.33 1e-114 X-RAY
2015-08-12 ASP A:24 A:24 47.0 0.313 H -47.0 -69.0 47.0 0.313 0.0 HOH
5.515
OD1
O
ASP B:24 B:24 48.0 0.32 H -44.0 -54.1 NA NA NA
ASP C:24 C:24 44.0 0.293 H -32.1 -72.8 NA NA NA
ASP D:24 D:24 46.0 0.307 H -41.4 -66.0 NA NA NA
4mvi 1 P80188 89.33 9e-114 X-RAY
2015-08-12 ASP A:24 A:24 36.0 0.24 H -55.9 -37.0 36.0 0.24 0.0 HOH
2.750
OD2
O
4mvk 1 P80188 89.33 9e-114 X-RAY
2015-08-12 ASP A:24 A:24 37.0 0.247 H -57.9 -38.6 37.0 0.247 0.0 HOH
2.671
OD2
O
5n48 1 P80188 88.2 1e-113 X-RAY
2018-02-14 ASP A:24 A:24 45.0 0.3 H -62.0 -33.7 45.0 0.3 0.0 HOH
2.529
OD1
O
ASP C:24 C:24 37.0 0.247 H -54.6 -35.6 NA NA NA
4gh7 1 P80188 88.2 1e-113 X-RAY
2012-12-26 ASP A:24 A:24 45.0 0.3 H -55.3 -36.6 45.0 0.3 0.0 HOH
6.197
N
O
ASP C:24 C:24 36.0 0.24 H -66.1 -28.9 NA NA NA
6s8v 1 P80188 88.2 9e-113 X-RAY
2020-03-04 ASP A:24 A:24 30.0 0.2 H -57.7 -34.8 30.0 0.2 0.0 HOH
2.744
OD1
O
ASP C:24 C:24 50.0 0.333 T -60.6 -38.1 NA NA NA
6sua 1 P80188 88.76 2e-112 X-RAY
2020-06-17 ASP A:24 A:24 38.0 0.253 T -63.8 -23.2 38.0 0.253 0.0 HOH
4.715
N
O
ASP C:24 C:24 33.0 0.22 T -63.5 -23.0 NA NA NA
4iaw 1 P80188 87.08 3e-112 X-RAY
2013-06-19 ASP A:24 A:24 38.0 0.253 H -63.2 -31.5 38.0 0.253 0.0 HOH
2.362
OD2
O
ASP B:24 B:24 47.0 0.313 H -58.1 -38.1 NA NA NA
ASP C:24 C:24 22.0 0.147 H -70.6 -13.8 NA NA NA
6z2c 1 P80188 88.2 4e-111 X-RAY
2021-05-26 ASP A:24 A:24 56.0 0.373 H -52.3 -41.5 56.0 0.373 0.0 HOH
2.508
OD1
O
ASP B:24 B:24 46.0 0.307 H -53.6 -40.5 NA NA NA
ASP C:24 C:24 55.0 0.367 H -52.9 -41.0 NA NA NA
6z6z 1 P80188 86.52 3e-110 X-RAY
2021-06-09 ASP A:25 A:24 26.0 0.173 H -62.3 -32.9 26.0 0.173 0.0 HOH
2.450
OD1
O
4qae 2 P80188 85.39 3e-109 X-RAY
2015-05-06 ASP G:24 A:24 35.0 0.233 H -62.4 -33.3 35.0 0.233 0.0 HOH
2.633
OD2
O
ASP H:24 B:24 37.0 0.247 H -63.7 -29.7 NA NA NA
ASP I:24 C:24 35.0 0.233 H -57.5 -38.5 NA NA NA
ASP J:24 D:24 37.0 0.247 H -53.5 -38.2 NA NA NA
ASP K:24 E:24 31.0 0.207 H -56.1 -33.6 NA NA NA
ASP L:24 F:24 36.0 0.24 H -57.4 -33.9 NA NA NA
3bx7 2 ? 83.15 4e-108 X-RAY
2009-01-20 ASP B:24 A:24 33.0 0.22 H -64.1 -29.8 33.0 0.22 0.0 HOH
2.687
OD2
O
3bx8 1 ? 83.15 4e-108 X-RAY
2009-01-20 ASP A:24 A:24 46.0 0.307 H -59.4 -30.6 46.0 0.307 0.0 HOH
2.595
OD2
O
ASP B:24 B:24 51.0 0.34 H -62.3 -33.7 NA NA NA
ASP C:24 C:24 41.0 0.273 H -56.1 -30.2 NA NA NA
ASP D:24 D:24 48.0 0.32 H -58.7 -30.5 NA NA NA
ASP E:24 E:24 36.0 0.24 T -64.8 6.3 NA NA NA
ASP F:24 F:24 41.0 0.273 H -57.1 -31.5 NA NA NA
ASP G:24 G:24 39.0 0.26 H -57.3 -26.4 NA NA NA
ASP H:24 H:24 35.0 0.233 T -58.3 -4.5 NA NA NA
5nkn 1 P80188 86.21 2e-106 X-RAY
2018-04-04 ASP A:20 A:24 32.0 0.213 H -59.0 -38.7 32.0 0.213 0.0 HOH
2.872
N
O
6gqz 1 P80188 85.63 7e-106 X-RAY
2018-08-15 ASP A:20 A:24 59.0 0.393 H -60.7 -36.2 59.0 0.393 0.0 HOH
2.685
OD1
O
ASP B:20 B:24 50.0 0.333 H -60.0 -35.8 NA NA NA
6gr0 1 P80188 85.63 7e-106 X-RAY
2018-08-15 ASP A:20 A:24 46.0 0.307 T -67.3 -34.3 46.0 0.307 0.0 HOH
6.159
O
O
ASP B:20 B:24 21.0 0.14 T -67.0 -34.5 NA NA NA
ASP C:20 C:24 43.0 0.287 T -66.6 -35.0 NA NA NA
4iax 1 P80188 81.46 3e-103 X-RAY
2013-06-19 ASP A:24 A:24 44.0 0.293 H -60.8 -32.4 44.0 0.293 0.0 HOH
2.786
N
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p80188-f1 1 P80188 100.0 1e-149 ASP A:44 A:44 34.0 0.227 H -60.8 -48.7