Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 130913969 . G A CCDS6892.1:NM_005564.3:c.328Ggc>Agc_NP_005555.2:p.110G>S Homo sapiens lipocalin 2 (LCN2), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hwe 1 P80188 99.49 4e-148 X-RAY
2010-06-02 GLY A:110 A:90 1.0 0.013 T 93.7 -1.8 1.0 0.013 0.0 HOH
8.701
CA
O
GLY B:110 B:90 1.0 0.013 T 103.8 -21.3 NA NA NA
GLY C:110 C:90 3.0 0.04 T 105.9 -20.4 NA NA NA
3hwf 1 P80188 99.49 4e-148 X-RAY
2010-06-02 GLY A:110 A:90 0.0 0.0 T 100.3 -28.2 0.0 0.0 0.0 HOH
9.515
C
O
GLY B:110 B:90 3.0 0.04 T 110.5 -11.7 NA NA NA
GLY C:110 C:90 2.0 0.027 T 107.5 -4.9 NA NA NA
3hwg 1 P80188 99.49 4e-148 X-RAY
2010-06-02 GLY A:110 A:90 1.0 0.013 T 102.0 -11.3 1.0 0.013 0.0 HOH
3.053
N
O
GLY B:110 B:90 1.0 0.013 T 104.4 -23.3 NA NA NA
GLY C:110 C:90 2.0 0.027 T 98.9 -8.2 NA NA NA
3u0d 1 P80188 99.49 4e-148 X-RAY
2011-10-12 GLY A:110 A:90 3.0 0.04 T 93.2 -3.3 3.0 0.04 0.0 HOH
2.578
N
O
GLY B:110 B:90 2.0 0.027 T 101.2 -13.0 NA NA NA
GLY C:110 C:90 1.0 0.013 T 94.0 -4.6 NA NA NA
GLY D:110 D:90 2.0 0.027 T 101.8 1.1 NA NA NA
3cbc 1 P80188 98.99 1e-147 X-RAY
2008-09-09 GLY A:110 A:90 2.0 0.027 T 101.6 -2.5 NA NA NA
GLY B:110 B:90 1.0 0.013 T 102.6 -10.8 1.0 0.013 0.0 HOH
3.095
N
O
GLY C:110 C:90 2.0 0.027 T 99.9 -7.4 NA NA NA
3cmp 1 P80188 98.99 3e-147 X-RAY
2009-05-12 GLY A:110 A:90 1.0 0.013 T 104.4 -29.7 1.0 0.013 0.0 HOH
6.511
N
O
GLY B:110 B:90 1.0 0.013 T 104.6 -18.7 NA NA NA
GLY C:110 C:90 2.0 0.027 T 108.3 -28.3 NA NA NA
3i0a 1 P80188 98.99 3e-147 X-RAY
2010-06-09 GLY A:110 A:90 1.0 0.013 T 86.2 9.0 1.0 0.013 0.0 HOH
9.514
C
O
GLY B:110 B:90 3.0 0.04 T 121.6 -28.4 NA NA NA
GLY C:110 C:90 2.0 0.027 T 101.2 -10.9 NA NA NA
3hwd 1 P80188 98.48 1e-146 X-RAY
2010-06-02 GLY A:110 A:90 1.0 0.013 T 99.5 -11.9 1.0 0.013 0.0 HOH
3.666
N
O
GLY B:110 B:90 1.0 0.013 T 120.8 -34.0 NA NA NA
GLY C:110 C:90 2.0 0.027 T 100.4 -13.9 NA NA NA
3by0 1 P80188 98.48 9e-146 X-RAY
2008-09-09 GLY A:110 A:90 0.0 0.0 T 96.6 -7.7 0.0 0.0 0.0 HOH
4.824
N
O
GLY B:110 B:90 1.0 0.013 T 115.2 -25.7 NA NA NA
GLY C:110 C:90 1.0 0.013 T 103.5 -11.6 NA NA NA
1dfv 1 P80188 100.0 2e-132 X-RAY
2000-03-06 GLY A:90 A:90 2.0 0.027 T 115.0 -22.2 2.0 0.027 0.0 HOH
4.154
N
O
GLY B:90 B:90 1.0 0.013 T 115.4 -12.9 NA NA NA
1l6m 1 P80188 98.88 3e-132 X-RAY
2003-03-11 GLY A:92 A:90 2.0 0.027 T 99.7 0.2 2.0 0.027 0.0 HOH
3.163
N
O
GLY B:92 B:90 0.0 0.0 T 97.0 -3.8 NA NA NA
GLY C:92 C:90 1.0 0.013 T 99.9 -3.8 NA NA NA
4k19 1 P80188 98.88 3e-132 X-RAY
2013-07-31 GLY A:92 A:90 1.0 0.013 T 102.8 -14.5 1.0 0.013 0.0 HOH
7.233
C
O
GLY B:92 B:90 1.0 0.013 T 100.0 -21.7 NA NA NA
GLY C:92 C:90 2.0 0.027 T 104.8 -17.1 NA NA NA
4zfx 1 P80188 98.88 3e-132 X-RAY
2015-08-05 GLY A:92 A:90 1.0 0.013 T 100.9 -6.5 1.0 0.013 0.0
GLY B:92 B:90 1.0 0.013 T 99.4 -7.8 1.0 0.013 0.0
GLY C:92 C:90 1.0 0.013 T 98.4 -9.1 1.0 0.013 0.0 HOH
4.682
N
O
4zhc 1 P80188 98.88 3e-132 X-RAY
2015-08-05 GLY A:92 A:90 2.0 0.027 T 99.8 -2.8 2.0 0.027 0.0 HOH
2.985
N
O
GLY B:92 B:90 2.0 0.027 T 98.5 -4.4 NA NA NA
GLY C:92 C:90 2.0 0.027 T 99.7 -5.6 NA NA NA
4zhd 1 P80188 98.88 3e-132 X-RAY
2015-08-05 GLY A:92 A:90 2.0 0.027 T 98.8 -4.8 2.0 0.027 0.0 HOH
2.927
N
O
GLY B:92 B:90 2.0 0.027 T 98.7 -7.3 NA NA NA
GLY C:92 C:90 2.0 0.027 T 98.6 -5.6 NA NA NA
4zhf 1 P80188 98.88 3e-132 X-RAY
2015-08-05 GLY A:92 A:90 2.0 0.027 T 97.4 -4.4 2.0 0.027 0.0 HOH
3.233
N
O
GLY B:92 B:90 1.0 0.013 T 97.5 -5.3 NA NA NA
GLY C:92 C:90 2.0 0.027 T 97.0 -5.0 NA NA NA
GLY D:92 D:90 2.0 0.027 T 98.6 -4.3 NA NA NA
GLY E:92 E:90 2.0 0.027 T 97.7 -6.3 NA NA NA
GLY F:92 F:90 2.0 0.027 T 97.0 -5.2 NA NA NA
4zhg 1 P80188 98.88 3e-132 X-RAY
2015-08-05 GLY A:92 A:90 2.0 0.027 T 97.3 -4.7 2.0 0.027 0.0 HOH
3.234
N
O
GLY B:92 B:90 1.0 0.013 T 95.0 -5.2 NA NA NA
GLY C:92 C:90 2.0 0.027 T 95.9 -6.2 NA NA NA
GLY D:92 D:90 2.0 0.027 T 99.2 -7.0 NA NA NA
GLY E:92 E:90 2.0 0.027 T 95.0 -2.9 NA NA NA
GLY F:92 F:90 2.0 0.027 T 94.7 -4.1 NA NA NA
4zhh 1 P80188 98.88 3e-132 X-RAY
2015-08-05 GLY A:92 A:90 2.0 0.027 T 93.8 -5.6 2.0 0.027 0.0 HOH
3.228
N
O
GLY B:92 B:90 1.0 0.013 T 93.3 -4.7 NA NA NA
GLY C:92 C:90 1.0 0.013 T 93.5 -4.6 NA NA NA
GLY D:92 D:90 2.0 0.027 T 96.6 -3.4 NA NA NA
GLY E:92 E:90 1.0 0.013 T 97.0 -4.4 NA NA NA
GLY F:92 F:90 2.0 0.027 T 96.7 -3.2 NA NA NA
5khp 1 P80188 98.88 3e-132 X-RAY
2017-04-26 GLY A:92 A:90 2.0 0.027 T 93.8 -2.0 2.0 0.027 0.0 HOH
8.837
CA
O
GLY B:92 B:90 1.0 0.013 T 93.1 -2.8 NA NA NA
GLY C:92 C:90 1.0 0.013 T 88.8 -2.4 NA NA NA
5kic 1 P80188 98.88 3e-132 X-RAY
2017-04-26 GLY A:92 A:90 2.0 0.027 T 94.4 -6.8 2.0 0.027 0.0 HOH
4.474
N
O
GLY B:92 B:90 2.0 0.027 T 92.6 -7.0 NA NA NA
GLY C:92 C:90 2.0 0.027 T 92.5 -7.5 NA NA NA
5kid 1 P80188 98.88 3e-132 X-RAY
2017-04-26 GLY A:92 A:90 1.0 0.013 T 96.1 -4.0 1.0 0.013 0.0 HOH
6.567
N
O
GLY B:92 B:90 1.0 0.013 T 96.8 -4.8 NA NA NA
GLY C:92 C:90 2.0 0.027 T 94.2 -1.4 NA NA NA
3tzs 1 P80188 98.88 4e-132 X-RAY
2011-10-12 GLY A:91 A:90 2.0 0.027 T 98.4 -5.7 2.0 0.027 0.0 HOH
3.088
N
O
GLY B:91 B:90 1.0 0.013 T 107.4 -0.7 NA NA NA
GLY C:91 C:90 1.0 0.013 T 103.0 -11.1 NA NA NA
1x71 1 P80188 99.44 5e-132 X-RAY
2005-01-18 GLY A:90 A:90 2.0 0.027 T 103.3 -0.6 2.0 0.027 0.0 HOH
2.852
N
O
GLY B:90 B:90 2.0 0.027 T 113.9 -11.6 NA NA NA
GLY C:90 C:90 3.0 0.04 T 108.0 -9.3 NA NA NA
1x89 1 P80188 99.44 5e-132 X-RAY
2005-01-25 GLY A:90 A:90 2.0 0.027 T 106.0 -3.2 2.0 0.027 0.0 HOH
2.898
N
O
GLY B:90 B:90 2.0 0.027 T 104.3 -12.9 NA NA NA
GLY C:90 C:90 2.0 0.027 T 100.0 -3.0 NA NA NA
1x8u 1 P80188 99.44 5e-132 X-RAY
2005-01-25 GLY A:90 A:90 3.0 0.04 T 100.9 -0.7 3.0 0.04 0.0 HOH
2.936
N
O
GLY B:90 B:90 1.0 0.013 T 107.3 -16.2 NA NA NA
GLY C:90 C:90 1.0 0.013 T 105.5 -7.0 NA NA NA
3fw4 1 P80188 99.44 5e-132 X-RAY
2010-05-05 GLY A:90 A:90 1.0 0.013 T 93.2 5.2 1.0 0.013 0.0 HOH
3.006
N
O
GLY B:90 B:90 26.0 0.347 -88.6 172.8 NA NA NA
GLY C:90 C:90 2.0 0.027 T 105.2 -10.6 NA NA NA
3fw5 1 P80188 99.44 5e-132 X-RAY
2010-05-05 GLY A:90 A:90 2.0 0.027 T 98.1 -2.2 2.0 0.027 0.0 HOH
3.120
N
O
GLY B:90 B:90 2.0 0.027 T 121.1 -23.6 NA NA NA
GLY C:90 C:90 1.0 0.013 T 100.8 -11.1 NA NA NA
3k3l 1 P80188 99.44 5e-132 X-RAY
2010-08-18 GLY A:90 A:90 1.0 0.013 T 92.1 1.0 1.0 0.013 0.0 HOH
7.195
C
O
GLY B:90 B:90 9.0 0.12 T 108.4 -23.3 NA NA NA
GLY C:90 C:90 2.0 0.027 T 101.4 -15.2 NA NA NA
3pec 1 P80188 99.44 5e-132 X-RAY
2011-10-05 GLY A:90 A:90 1.0 0.013 T 103.0 -9.6 1.0 0.013 0.0 HOH
2.944
N
O
GLY B:90 B:90 1.0 0.013 T 112.6 -30.7 NA NA NA
GLY C:90 C:90 2.0 0.027 T 102.0 -9.4 NA NA NA
3ped 1 P80188 99.44 5e-132 X-RAY
2011-10-05 GLY A:90 A:90 2.0 0.027 T 102.3 -4.8 2.0 0.027 0.0 HOH
3.160
N
O
GLY B:90 B:90 2.0 0.027 T 103.8 -14.8 NA NA NA
GLY C:90 C:90 2.0 0.027 T 99.6 -3.7 NA NA NA
3tf6 1 P80188 98.88 5e-132 X-RAY
2011-09-07 GLY A:91 A:90 2.0 0.027 T 99.5 -4.6 2.0 0.027 0.0 HOH
4.550
N
O
GLY B:91 B:90 1.0 0.013 T 100.8 -6.9 NA NA NA
GLY C:91 C:90 2.0 0.027 T 98.5 -6.5 NA NA NA
6o5d 1 P80188 99.43 7e-129 X-RAY
2019-09-11 GLY A:86 A:90 1.0 0.013 T 96.6 -3.0 1.0 0.013 0.0
GLY B:86 B:90 7.0 0.093 T 96.8 -3.7 NA NA NA
GLY C:86 C:90 2.0 0.027 T 97.5 -5.1 NA NA NA
5mhh 1 P80188 96.63 1e-127 X-RAY
2017-10-11 GLY A:90 A:90 2.0 0.027 T 88.1 0.6 2.0 0.027 0.0 HOH
3.177
N
O
6qmu 1 P80188 96.63 1e-127 X-RAY
2019-08-28 GLY A:90 A:90 2.0 0.027 T 96.8 -2.7 2.0 0.027 0.0 HOH
2.898
N
O
GLY B:90 B:90 3.0 0.04 T 96.1 0.0 NA NA NA
3t1d 1 P80188 97.78 1e-120 X-RAY
2011-08-17 GLY A:110 A:90 2.0 0.027 T 98.7 -4.2 2.0 0.027 0.0 GOL
HOH
6.542
2.965
N
N
O3
O
GLY B:110 B:90 2.0 0.027 T 106.0 4.9 NA NA NA
GLY C:110 C:90 3.0 0.04 T 96.3 -5.0 NA NA NA
3dsz 1 ? 91.57 4e-120 X-RAY
2009-05-19 GLY A:90 A:90 3.0 0.04 T 100.5 -2.4 3.0 0.04 0.0 HOH
2.871
N
O
GLY B:90 B:90 1.0 0.013 T 101.1 -6.0 NA NA NA
3dtq 1 P80188 91.57 4e-120 X-RAY
2009-05-12 GLY A:90 A:90 2.0 0.027 T 94.1 -1.6 2.0 0.027 0.0 HOH
2.871
N
O
GLY B:90 B:90 3.0 0.04 T 111.4 -17.9 NA NA NA
GLY C:90 C:90 1.0 0.013 T 105.3 -5.5 NA NA NA
5n47 1 P80188 90.45 6e-118 X-RAY
2018-02-14 GLY A:90 A:90 3.0 0.04 T 110.5 -10.2 3.0 0.04 0.0
GLY C:90 C:90 1.0 0.013 T 114.5 -18.0 NA NA NA
GLY E:90 E:90 2.0 0.027 T 107.7 -5.9 NA NA NA
1qqs 1 P80188 97.7 4e-116 X-RAY
2000-04-21 GLY A:87 A:90 3.0 0.04 T 106.3 2.4 3.0 0.04 0.0 HOH
2.908
N
O
5jr8 1 P80188 94.38 3e-115 X-RAY
2016-09-28 GLY A:90 A:90 2.0 0.027 T 111.8 -5.7 2.0 0.027 0.0 HOH
3.005
N
O
GLY B:90 B:90 2.0 0.027 T 106.8 -4.8 NA NA NA
4mvl 1 P80188 89.33 1e-114 X-RAY
2015-08-12 GLY A:90 A:90 1.0 0.013 T 99.2 -7.8 1.0 0.013 0.0 HOH
3.142
N
O
GLY B:90 B:90 2.0 0.027 T 104.8 -5.9 NA NA NA
GLY C:90 C:90 0.0 0.0 T 114.3 -19.0 NA NA NA
GLY D:90 D:90 2.0 0.027 T 97.9 -7.9 NA NA NA
4mvi 1 P80188 89.33 9e-114 X-RAY
2015-08-12 GLY A:90 A:90 1.0 0.013 T 93.7 -4.8 1.0 0.013 0.0 HOH
3.054
N
O
4mvk 1 P80188 89.33 9e-114 X-RAY
2015-08-12 GLY A:90 A:90 1.0 0.013 T 98.1 -5.3 1.0 0.013 0.0 HOH
2.949
N
O
5n48 1 P80188 88.2 1e-113 X-RAY
2018-02-14 GLY A:90 A:90 3.0 0.04 T 96.1 -1.8 3.0 0.04 0.0 HOH
2.781
N
O
GLY C:90 C:90 2.0 0.027 T 105.6 -5.1 NA NA NA
4gh7 1 P80188 88.2 1e-113 X-RAY
2012-12-26 GLY A:90 A:90 1.0 0.013 T 102.8 -15.6 1.0 0.013 0.0 HOH
3.246
N
O
GLY C:90 C:90 3.0 0.04 T 88.9 -5.4 NA NA NA
6s8v 1 P80188 88.2 9e-113 X-RAY
2020-03-04 GLY A:90 A:90 2.0 0.027 T 95.6 -1.5 2.0 0.027 0.0 HOH
3.178
N
O
GLY C:90 C:90 2.0 0.027 T 96.5 -1.3 NA NA NA
6sua 1 P80188 88.76 2e-112 X-RAY
2020-06-17 GLY A:90 A:90 0.0 0.0 T 98.9 -17.1 0.0 0.0 0.0 HOH
4.392
N
O
GLY C:90 C:90 1.0 0.013 T 98.6 -16.7 NA NA NA
4iaw 1 P80188 87.08 3e-112 X-RAY
2013-06-19 GLY A:90 A:90 2.0 0.027 T 101.3 -8.1 2.0 0.027 0.0 HOH
2.679
N
O
GLY B:90 B:90 1.0 0.013 T 97.6 -8.5 NA NA NA
GLY C:90 C:90 1.0 0.013 T 112.9 -27.7 NA NA NA
6z2c 1 P80188 88.2 4e-111 X-RAY
2021-05-26 GLY A:90 A:90 3.0 0.04 T 103.9 -9.9 3.0 0.04 0.0 HOH
3.011
N
O
GLY B:90 B:90 1.0 0.013 T 104.5 -10.3 NA NA NA
GLY C:90 C:90 1.0 0.013 T 105.8 -11.4 NA NA NA
6z6z 1 P80188 86.52 3e-110 X-RAY
2021-06-09 GLY A:91 A:90 0.0 0.0 T 93.1 -6.0 0.0 0.0 0.0 HOH
3.175
N
O
4qae 2 P80188 85.39 3e-109 X-RAY
2015-05-06 GLY G:90 A:90 4.0 0.053 T 85.8 0.1 4.0 0.053 0.0 HOH
3.191
N
O
GLY H:90 B:90 1.0 0.013 T 94.2 -5.6 NA NA NA
GLY I:90 C:90 1.0 0.013 T 95.0 -4.3 NA NA NA
GLY J:90 D:90 1.0 0.013 T 90.7 -2.5 NA NA NA
GLY K:90 E:90 1.0 0.013 T 97.0 3.8 NA NA NA
GLY L:90 F:90 3.0 0.04 T 82.7 -2.9 NA NA NA
3bx7 2 ? 83.15 4e-108 X-RAY
2009-01-20 GLY B:90 A:90 2.0 0.027 T 101.1 -5.5 2.0 0.027 0.0 HOH
3.000
N
O
3bx8 1 ? 83.15 4e-108 X-RAY
2009-01-20 GLY A:90 A:90 1.0 0.013 T 105.7 -7.4 1.0 0.013 0.0 HOH
2.852
N
O
GLY B:90 B:90 2.0 0.027 T 112.7 -3.9 NA NA NA
GLY C:90 C:90 1.0 0.013 T 114.1 -9.7 NA NA NA
GLY D:90 D:90 1.0 0.013 T 108.6 0.4 NA NA NA
GLY E:90 E:90 2.0 0.027 T 107.8 6.2 NA NA NA
GLY F:90 F:90 2.0 0.027 T 106.4 8.5 NA NA NA
GLY G:90 G:90 2.0 0.027 T 114.8 -2.2 NA NA NA
GLY H:90 H:90 2.0 0.027 T 108.6 7.2 NA NA NA
5nkn 1 P80188 86.21 2e-106 X-RAY
2018-04-04 GLY A:86 A:90 0.0 0.0 T 105.1 -13.8 0.0 0.0 0.0 HOH
3.236
N
O
6gqz 1 P80188 85.63 7e-106 X-RAY
2018-08-15 GLY A:86 A:90 2.0 0.027 T 97.9 -3.3 2.0 0.027 0.0 HOH
2.937
N
O
GLY B:86 B:90 3.0 0.04 T 97.6 -3.8 NA NA NA
6gr0 1 P80188 85.63 7e-106 X-RAY
2018-08-15 GLY A:86 A:90 1.0 0.013 T 102.7 -5.1 1.0 0.013 0.0 HOH
4.908
N
O
GLY B:86 B:90 1.0 0.013 T 104.2 -8.4 NA NA NA
GLY C:86 C:90 2.0 0.027 T 103.3 -5.4 NA NA NA
4iax 1 P80188 81.46 3e-103 X-RAY
2013-06-19 GLY A:90 A:90 2.0 0.027 T 100.8 1.5 2.0 0.027 0.0 HOH
2.572
N
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p80188-f1 1 P80188 100.0 1e-149 GLY A:110 A:110 2.0 0.027 T 90.3 -4.2