Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 130913979 . C A CCDS6892.1:NM_005564.3:c.338aCg>aAg_NP_005555.2:p.113T>K Homo sapiens lipocalin 2 (LCN2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hwe 1 P80188 99.49 4e-148 X-RAY
 2010-06-02 THR A:113 A:93 57.0 0.407 E -127.9 163.5 57.0 0.407 0.0 RKS
HOH
 8.613
7.749
 C
OG1
 C21
O
THR B:113 B:93 68.0 0.486 E -112.1 159.0 NA NA NA
THR C:113 C:93 61.0 0.436 E -107.9 161.8 NA NA NA
3hwf 1 P80188 99.49 4e-148 X-RAY
 2010-06-02 THR A:113 A:93 59.0 0.421 E -135.5 155.8 59.0 0.421 0.0 TC2
HOH
 9.444
6.910
 C
O
 C26
O
THR B:113 B:93 62.0 0.443 E -106.8 159.4 NA NA NA
THR C:113 C:93 56.0 0.4 E -127.4 152.7 NA NA NA
3hwg 1 P80188 99.49 4e-148 X-RAY
 2010-06-02 THR A:113 A:93 66.0 0.471 E -123.7 164.0 66.0 0.471 0.0 QED
NA
NA
HOH
 9.073
7.738
2.789
3.009
 C
O
OG1
OG1
 C4
NA
NA
O
THR B:113 B:93 61.0 0.436 E -115.3 157.6 NA NA NA
THR C:113 C:93 60.0 0.429 E -109.7 165.9 NA NA NA
3u0d 1 P80188 99.49 4e-148 X-RAY
 2011-10-12 THR A:113 A:93 64.0 0.457 E -98.6 166.9 64.0 0.457 0.0 DBH
HOH
 8.710
6.090
 C
OG1
 C9
O
THR B:113 B:93 57.0 0.407 E -109.0 -177.7 NA NA NA
THR C:113 C:93 68.0 0.486 E -126.9 176.9 NA NA NA
THR D:113 D:93 60.0 0.429 E -114.0 168.6 NA NA NA
3cbc 1 P80188 98.99 1e-147 X-RAY
 2008-09-09 THR A:113 A:93 63.0 0.45 E -116.4 171.4 NA NA NA
THR B:113 B:93 58.0 0.414 E -120.7 166.1 58.0 0.414 0.0 DBS
HOH
 9.798
2.845
 C
OG1
 O4
O
THR C:113 C:93 60.0 0.429 E -109.1 168.0 NA NA NA
3cmp 1 P80188 98.99 3e-147 X-RAY
 2009-05-12 THR A:113 A:93 59.0 0.421 E -124.7 160.2 59.0 0.421 0.0 EB4
HOH
 9.496
7.339
 C
O
 C8
O
THR B:113 B:93 61.0 0.436 E -112.6 159.3 NA NA NA
THR C:113 C:93 59.0 0.421 E -111.6 160.6 NA NA NA
3i0a 1 P80188 98.99 3e-147 X-RAY
 2010-06-09 THR A:113 A:93 62.0 0.443 E -129.5 166.4 62.0 0.443 0.0 2DS
HOH
 8.938
2.882
 C
OG1
 C7
O
THR B:113 B:93 56.0 0.4 E -126.4 153.5 NA NA NA
THR C:113 C:93 62.0 0.443 E -110.2 160.1 NA NA NA
3hwd 1 P80188 98.48 1e-146 X-RAY
 2010-06-02 THR A:113 A:93 60.0 0.429 E -113.5 160.3 60.0 0.429 0.0 HOH
 2.798
 OG1
 O
THR B:113 B:93 70.0 0.5 E -92.4 154.6 NA NA NA
THR C:113 C:93 62.0 0.443 E -111.6 160.1 NA NA NA
3by0 1 P80188 98.48 9e-146 X-RAY
 2008-09-09 THR A:113 A:93 62.0 0.443 E -122.5 164.2 62.0 0.443 0.0 DBH
HOH
 8.941
3.555
 C
OG1
 O9
O
THR B:113 B:93 55.0 0.393 E -132.8 157.6 NA NA NA
THR C:113 C:93 63.0 0.45 E -110.9 160.9 NA NA NA
1dfv 1 P80188 100.0 2e-132 X-RAY
 2000-03-06 THR A:93 A:93 69.0 0.493 E -115.5 175.3 69.0 0.493 0.0 SO4
SO4
HOH
 9.692
6.939
6.948
 C
O
OG1
 O4
O3
O
THR B:93 B:93 69.0 0.493 E -124.4 163.8 NA NA NA
1l6m 1 P80188 98.88 3e-132 X-RAY
 2003-03-11 THR A:95 A:93 56.0 0.4 E -122.6 166.8 56.0 0.4 0.0 SO4
DBH
HOH
 7.905
8.687
5.364
 O
C
N
 O1
O17
O
THR B:95 B:93 58.0 0.414 E -129.9 164.9 NA NA NA
THR C:95 C:93 58.0 0.414 E -118.4 166.3 NA NA NA
4k19 1 P80188 98.88 3e-132 X-RAY
 2013-07-31 THR A:95 A:93 58.0 0.414 E -128.4 177.0 58.0 0.414 0.0 1OD
HOH
 9.029
3.198
 C
OG1
 C24
O
THR B:95 B:93 68.0 0.486 E -112.0 151.7 NA NA NA
THR C:95 C:93 69.0 0.493 E -108.5 157.0 NA NA NA
4zfx 1 P80188 98.88 3e-132 X-RAY
 2015-08-05 THR A:95 A:93 66.0 0.471 E -112.3 158.1 66.0 0.471 0.0
THR B:95 B:93 61.0 0.436 E -115.3 157.7 61.0 0.436 0.0
THR C:95 C:93 62.0 0.443 E -114.9 159.7 62.0 0.443 0.0 HOH
 6.773
 O
 O
4zhc 1 P80188 98.88 3e-132 X-RAY
 2015-08-05 THR A:95 A:93 57.0 0.407 E -119.4 170.8 57.0 0.407 0.0 HOH
 2.896
 CG2
 O
THR B:95 B:93 53.0 0.379 E -123.0 173.8 NA NA NA
THR C:95 C:93 63.0 0.45 E -114.2 164.4 NA NA NA
4zhd 1 P80188 98.88 3e-132 X-RAY
 2015-08-05 THR A:95 A:93 65.0 0.464 E -112.3 173.0 65.0 0.464 0.0 HOH
 3.080
 CB
 O
THR B:95 B:93 65.0 0.464 E -111.1 169.9 NA NA NA
THR C:95 C:93 59.0 0.421 E -112.3 168.5 NA NA NA
4zhf 1 P80188 98.88 3e-132 X-RAY
 2015-08-05 THR A:95 A:93 60.0 0.429 E -113.6 164.2 60.0 0.429 0.0 HOH
 3.878
 CG2
 O
THR B:95 B:93 59.0 0.421 E -115.4 165.5 NA NA NA
THR C:95 C:93 60.0 0.429 E -115.5 165.5 NA NA NA
THR D:95 D:93 61.0 0.436 E -113.1 165.4 NA NA NA
THR E:95 E:93 50.0 0.357 E -119.9 174.4 NA NA NA
THR F:95 F:93 50.0 0.357 E -120.2 173.5 NA NA NA
4zhg 1 P80188 98.88 3e-132 X-RAY
 2015-08-05 THR A:95 A:93 62.0 0.443 E -114.5 161.2 62.0 0.443 0.0 HOH
 3.836
 CG2
 O
THR B:95 B:93 59.0 0.421 E -116.3 163.1 NA NA NA
THR C:95 C:93 57.0 0.407 E -116.2 164.2 NA NA NA
THR D:95 D:93 62.0 0.443 E -117.4 163.2 NA NA NA
THR E:95 E:93 44.0 0.314 E -125.9 -177.9 NA NA NA
THR F:95 F:93 44.0 0.314 E -127.2 -179.6 NA NA NA
4zhh 1 P80188 98.88 3e-132 X-RAY
 2015-08-05 THR A:95 A:93 56.0 0.4 E -119.2 164.5 56.0 0.4 0.0 HOH
 2.612
 OG1
 O
THR B:95 B:93 55.0 0.393 E -122.2 164.3 NA NA NA
THR C:95 C:93 54.0 0.386 E -120.8 166.0 NA NA NA
THR D:95 D:93 56.0 0.4 E -117.9 165.1 NA NA NA
THR E:95 E:93 45.0 0.321 E -124.9 178.2 NA NA NA
THR F:95 F:93 46.0 0.329 E -127.7 -179.6 NA NA NA
5khp 1 P80188 98.88 3e-132 X-RAY
 2017-04-26 THR A:95 A:93 62.0 0.443 E -126.4 168.6 62.0 0.443 0.0 SO4
SO4
HOH
 8.905
7.434
7.134
 O
O
O
 O2
O2
O
THR B:95 B:93 68.0 0.486 E -122.3 166.5 NA NA NA
THR C:95 C:93 63.0 0.45 E -127.9 168.7 NA NA NA
5kic 1 P80188 98.88 3e-132 X-RAY
 2017-04-26 THR A:95 A:93 64.0 0.457 E -112.2 170.3 64.0 0.457 0.0 HOH
 6.854
 O
 O
THR B:95 B:93 55.0 0.393 E -113.6 172.7 NA NA NA
THR C:95 C:93 63.0 0.45 E -113.8 170.3 NA NA NA
5kid 1 P80188 98.88 3e-132 X-RAY
 2017-04-26 THR A:95 A:93 65.0 0.464 E -113.6 169.7 65.0 0.464 0.0 HOH
 6.914
 O
 O
THR B:95 B:93 64.0 0.457 E -113.4 168.8 NA NA NA
THR C:95 C:93 60.0 0.429 E -111.8 170.8 NA NA NA
3tzs 1 P80188 98.88 4e-132 X-RAY
 2011-10-12 THR A:94 A:93 64.0 0.457 E -114.4 167.8 64.0 0.457 0.0 SO4
EDO
HOH
 9.572
3.208
4.801
 C
CB
CG2
 O2
O2
O
THR B:94 B:93 46.0 0.329 E -124.6 -178.5 NA NA NA
THR C:94 C:93 57.0 0.407 E -118.1 167.1 NA NA NA
1x71 1 P80188 99.44 5e-132 X-RAY
 2005-01-18 THR A:93 A:93 63.0 0.45 E -120.2 167.4 63.0 0.45 0.0 HOH
 3.402
 OG1
 O
THR B:93 B:93 56.0 0.4 E -122.1 164.6 NA NA NA
THR C:93 C:93 64.0 0.457 E -106.2 172.7 NA NA NA
1x89 1 P80188 99.44 5e-132 X-RAY
 2005-01-25 THR A:93 A:93 58.0 0.414 E -125.1 168.9 58.0 0.414 0.0 HOH
 3.040
 OG1
 O
THR B:93 B:93 57.0 0.407 E -124.1 163.5 NA NA NA
THR C:93 C:93 59.0 0.421 E -113.0 170.0 NA NA NA
1x8u 1 P80188 99.44 5e-132 X-RAY
 2005-01-25 THR A:93 A:93 56.0 0.4 E -127.6 170.0 56.0 0.4 0.0 HOH
 3.356
 OG1
 O
THR B:93 B:93 56.0 0.4 E -120.8 166.0 NA NA NA
THR C:93 C:93 62.0 0.443 E -116.5 161.6 NA NA NA
3fw4 1 P80188 99.44 5e-132 X-RAY
 2010-05-05 THR A:93 A:93 63.0 0.45 E -122.8 163.3 63.0 0.45 0.0 HOH
 4.072
 CG2
 O
THR B:93 B:93 77.0 0.55 -77.5 -109.4 NA NA NA
THR C:93 C:93 63.0 0.45 E -106.3 168.6 NA NA NA
3fw5 1 P80188 99.44 5e-132 X-RAY
 2010-05-05 THR A:93 A:93 62.0 0.443 E -119.1 167.7 62.0 0.443 0.0 HOH
 4.249
 CG2
 O
THR B:93 B:93 47.0 NA E -126.4 166.2 NA NA NA
THR C:93 C:93 63.0 0.45 E -106.3 165.8 NA NA NA
3k3l 1 P80188 99.44 5e-132 X-RAY
 2010-08-18 THR A:93 A:93 62.0 0.443 E -127.4 164.0 62.0 0.443 0.0 HOH
 2.924
 OG1
 O
THR B:93 B:93 45.0 NA E -111.8 163.2 NA NA NA
THR C:93 C:93 60.0 0.429 E -107.4 161.7 NA NA NA
3pec 1 P80188 99.44 5e-132 X-RAY
 2011-10-05 THR A:93 A:93 63.0 0.45 E -121.4 165.9 63.0 0.45 0.0 HOH
 7.042
 O
 O
THR B:93 B:93 70.0 0.5 E -106.8 149.8 NA NA NA
THR C:93 C:93 62.0 0.443 E -104.8 165.1 NA NA NA
3ped 1 P80188 99.44 5e-132 X-RAY
 2011-10-05 THR A:93 A:93 58.0 0.414 E -124.0 171.1 58.0 0.414 0.0 ZYF
HOH
 9.876
3.412
 O
OG1
 C51
O
THR B:93 B:93 56.0 0.4 E -121.3 165.7 NA NA NA
THR C:93 C:93 59.0 0.421 E -113.2 161.9 NA NA NA
3tf6 1 P80188 98.88 5e-132 X-RAY
 2011-09-07 THR A:94 A:93 63.0 0.45 E -116.8 169.4 63.0 0.45 0.0 HOH
 3.165
 OG1
 O
THR B:94 B:93 59.0 0.421 E -113.2 167.3 NA NA NA
THR C:94 C:93 58.0 0.414 E -114.5 166.8 NA NA NA
6o5d 1 P80188 99.43 7e-129 X-RAY
 2019-09-11 THR A:89 A:93 62.0 0.443 E -110.5 164.8 62.0 0.443 0.0 SO4
HOH
 9.714
3.447
 C
OG1
 O1
O
THR B:89 B:93 62.0 0.443 E -109.3 163.3 NA NA NA
THR C:89 C:93 62.0 0.443 E -108.2 162.8 NA NA NA
5mhh 1 P80188 96.63 1e-127 X-RAY
 2017-10-11 THR A:93 A:93 55.0 0.393 E -126.9 169.3 55.0 0.393 0.0 SO4
HOH
 7.499
6.766
 O
O
 O3
O
6qmu 1 P80188 96.63 1e-127 X-RAY
 2019-08-28 THR A:93 A:93 54.0 0.386 E -127.6 165.5 54.0 0.386 0.0 HOH
 6.839
 O
 O
THR B:93 B:93 50.0 0.357 E -122.4 172.5 NA NA NA
3t1d 1 P80188 97.78 1e-120 X-RAY
 2011-08-17 THR A:113 A:93 62.0 0.443 E -109.5 168.2 62.0 0.443 0.0 GOL
HOH
 3.485
2.691
 CB
OG1
 O3
O
THR B:113 B:93 65.0 0.464 E -117.7 176.3 NA NA NA
THR C:113 C:93 58.0 0.414 E -117.2 166.7 NA NA NA
3dsz 1 ? 91.57 4e-120 X-RAY
 2009-05-19 THR A:93 A:93 65.0 0.464 E -125.0 174.6 65.0 0.464 0.0 LIZ
HOH
 9.931
2.624
 O
OG1
 C17
O
THR B:93 B:93 66.0 0.471 E -120.4 169.7 NA NA NA
3dtq 1 P80188 91.57 4e-120 X-RAY
 2009-05-12 THR A:93 A:93 61.0 0.436 E -128.4 158.5 61.0 0.436 0.0 HOH
 3.284
 OG1
 O
THR B:93 B:93 51.0 0.364 E -144.3 151.0 NA NA NA
THR C:93 C:93 58.0 0.414 E -122.2 159.6 NA NA NA
5n47 1 P80188 90.45 6e-118 X-RAY
 2018-02-14 THR A:93 A:93 13.0 0.093 E -114.1 155.6 13.0 0.093 0.0
THR C:93 C:93 15.0 0.107 E -134.8 147.7 NA NA NA
THR E:93 E:93 14.0 0.1 E -140.6 143.9 NA NA NA
1qqs 1 P80188 97.7 4e-116 X-RAY
 2000-04-21 THR A:90 A:93 64.0 0.457 E -123.8 162.5 64.0 0.457 0.0 DKA
HOH
 9.658
3.238
 C
CB
 C8
O
5jr8 1 P80188 94.38 3e-115 X-RAY
 2016-09-28 THR A:93 A:93 61.0 0.436 E -115.5 170.6 61.0 0.436 0.0 HOH
 2.707
 OG1
 O
THR B:93 B:93 67.0 0.479 E -112.9 170.0 NA NA NA
4mvl 1 P80188 89.33 1e-114 X-RAY
 2015-08-12 THR A:93 A:93 53.0 0.379 E -120.5 162.9 53.0 0.379 0.0 HOH
 3.089
 OG1
 O
THR B:93 B:93 38.0 0.271 E -162.9 168.8 NA NA NA
THR C:93 C:93 40.0 0.286 E -141.8 165.0 NA NA NA
THR D:93 D:93 48.0 0.343 E -130.8 158.7 NA NA NA
4mvi 1 P80188 89.33 9e-114 X-RAY
 2015-08-12 THR A:93 A:93 50.0 0.357 E -128.0 158.8 50.0 0.357 0.0 HOH
 2.734
 OG1
 O
4mvk 1 P80188 89.33 9e-114 X-RAY
 2015-08-12 THR A:93 A:93 41.0 0.293 E -124.8 155.7 41.0 0.293 0.0 HOH
 2.694
 OG1
 O
5n48 1 P80188 88.2 1e-113 X-RAY
 2018-02-14 THR A:93 A:93 54.0 0.386 E -127.0 157.0 54.0 0.386 0.0 HOH
 2.527
 OG1
 O
THR C:93 C:93 51.0 0.364 E -129.1 161.1 NA NA NA
4gh7 1 P80188 88.2 1e-113 X-RAY
 2012-12-26 THR A:93 A:93 50.0 0.357 E -124.6 -177.2 50.0 0.357 0.0 HOH
 7.237
 N
 O
THR C:93 C:93 44.0 0.314 E -128.0 166.8 NA NA NA
6s8v 1 P80188 88.2 9e-113 X-RAY
 2020-03-04 THR A:93 A:93 62.0 0.443 E -125.2 168.5 62.0 0.443 0.0 HOH
 2.628
 OG1
 O
THR C:93 C:93 54.0 0.386 E -127.8 159.3 NA NA NA
6sua 1 P80188 88.76 2e-112 X-RAY
 2020-06-17 THR A:93 A:93 8.0 0.057 E -120.3 172.1 8.0 0.057 0.0
THR C:93 C:93 7.0 0.05 E -120.3 171.4 NA NA NA
4iaw 1 P80188 87.08 3e-112 X-RAY
 2013-06-19 THR A:93 A:93 60.0 0.429 E -110.8 177.7 60.0 0.429 0.0 LIZ
HOH
 9.497
3.288
 O
CB
 C17
O
THR B:93 B:93 65.0 0.464 E -117.2 166.4 NA NA NA
THR C:93 C:93 58.0 0.414 E -129.5 151.0 NA NA NA
6z2c 1 P80188 88.2 4e-111 X-RAY
 2021-05-26 THR A:93 A:93 63.0 0.45 E -123.2 170.9 63.0 0.45 0.0 Q5E
HOH
 9.565
2.702
 C
OG1
 OAQ
O
THR B:93 B:93 60.0 0.429 E -123.3 169.8 NA NA NA
THR C:93 C:93 65.0 0.464 E -122.5 170.2 NA NA NA
6z6z 1 P80188 86.52 3e-110 X-RAY
 2021-06-09 THR A:94 A:93 59.0 0.421 E -106.6 136.3 59.0 0.421 0.0 HOH
 7.454
 CG2
 O
4qae 2 P80188 85.39 3e-109 X-RAY
 2015-05-06 THR G:93 A:93 8.0 0.057 E -117.0 162.7 8.0 0.057 0.0 HOH
 2.943
 OG1
 O
THR H:93 B:93 15.0 0.107 E -108.5 162.0 NA NA NA
THR I:93 C:93 62.0 0.443 E -119.8 172.3 NA NA NA
THR J:93 D:93 65.0 0.464 E -115.8 164.2 NA NA NA
THR K:93 E:93 66.0 0.471 E -111.2 164.2 NA NA NA
THR L:93 F:93 55.0 0.393 E -112.7 163.5 NA NA NA
3bx7 2 ? 83.15 4e-108 X-RAY
 2009-01-20 THR B:93 A:93 39.0 0.279 E -138.1 174.6 39.0 0.279 0.0 HOH
 3.890
 CG2
 O
3bx8 1 ? 83.15 4e-108 X-RAY
 2009-01-20 THR A:93 A:93 35.0 0.25 E -126.0 154.7 35.0 0.25 0.0 1PE
HOH
 9.889
7.340
 C
N
 C13
O
THR B:93 B:93 59.0 0.421 E -125.7 171.4 NA NA NA
THR C:93 C:93 22.0 0.157 E -124.1 158.1 NA NA NA
THR D:93 D:93 61.0 0.436 E -131.6 167.0 NA NA NA
THR E:93 E:93 49.0 0.35 E -152.9 -178.6 NA NA NA
THR F:93 F:93 61.0 0.436 E -114.4 169.8 NA NA NA
THR G:93 G:93 62.0 0.443 E -106.3 173.0 NA NA NA
THR H:93 H:93 47.0 0.336 E -144.6 177.7 NA NA NA
5nkn 1 P80188 86.21 2e-106 X-RAY
 2018-04-04 THR A:89 A:93 62.0 0.443 E -113.4 133.7 62.0 0.443 0.0 LOC
HOH
 9.356
4.757
 C
CG2
 C9
O
6gqz 1 P80188 85.63 7e-106 X-RAY
 2018-08-15 THR A:89 A:93 64.0 0.457 E -111.4 170.8 64.0 0.457 0.0 HOH
 2.668
 OG1
 O
THR B:89 B:93 56.0 0.4 E -114.1 171.5 NA NA NA
6gr0 1 P80188 85.63 7e-106 X-RAY
 2018-08-15 THR A:89 A:93 63.0 0.45 E -124.7 166.0 63.0 0.45 0.0 HOH
 3.609
 CG2
 O
THR B:89 B:93 67.0 0.479 E -123.4 165.4 NA NA NA
THR C:89 C:93 65.0 0.464 E -122.2 165.9 NA NA NA
4iax 1 P80188 81.46 3e-103 X-RAY
 2013-06-19 THR A:93 A:93 65.0 0.464 E -122.0 -179.3 65.0 0.464 0.0 LIZ
HOH
 9.857
3.323
 O
CB
 C17
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p80188-f1 1 P80188 100.0 1e-149 THR A:113 A:113 60.0 0.429 E -117.3 166.6