Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 130914200 . C A CCDS6892.1:NM_005564.3:c.371aCg>aAg_NP_005555.2:p.124T>K Homo sapiens lipocalin 2 (LCN2), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hwe 1 P80188 99.49 4e-148 X-RAY
2010-06-02 THR A:124 A:104 97.0 0.693 E -114.1 -13.4 97.0 0.693 0.0 RKS
HOH
8.258
6.415
N
OG1
C18
O
THR B:124 B:104 89.0 0.636 E -105.7 -32.1 NA NA NA
THR C:124 C:104 97.0 0.693 E -111.8 -8.3 NA NA NA
3hwf 1 P80188 99.49 4e-148 X-RAY
2010-06-02 THR A:124 A:104 96.0 0.686 E -102.9 -39.5 96.0 0.686 0.0 TC2
NA
8.748
7.301
N
OG1
C27
NA
THR B:124 B:104 92.0 0.657 E -106.2 -56.5 NA NA NA
THR C:124 C:104 98.0 0.7 E -105.6 -8.5 NA NA NA
3hwg 1 P80188 99.49 4e-148 X-RAY
2010-06-02 THR A:124 A:104 98.0 0.7 E -109.1 -18.6 98.0 0.7 0.0 QED
NA
HOH
8.239
4.787
5.534
N
O
O
C6
NA
O
THR B:124 B:104 87.0 0.621 E -99.3 -36.6 NA NA NA
THR C:124 C:104 93.0 0.664 E -108.2 -15.2 NA NA NA
3u0d 1 P80188 99.49 4e-148 X-RAY
2011-10-12 THR A:124 A:104 94.0 0.671 E -108.6 -7.1 94.0 0.671 0.0 DBH
HOH
8.630
2.679
N
OG1
C15
O
THR B:124 B:104 101.0 0.721 E -117.1 8.6 NA NA NA
THR C:124 C:104 95.0 0.679 E -101.1 -28.0 NA NA NA
THR D:124 D:104 107.0 0.764 E -92.1 -8.4 NA NA NA
3cbc 1 P80188 98.99 1e-147 X-RAY
2008-09-09 THR A:124 A:104 97.0 0.693 E -112.7 -11.0 NA NA NA
THR B:124 B:104 92.0 0.657 E -105.0 -31.8 92.0 0.657 0.0 HOH
2.687
O
O
THR C:124 C:104 96.0 0.686 E -110.0 -15.0 NA NA NA
3cmp 1 P80188 98.99 3e-147 X-RAY
2009-05-12 THR A:124 A:104 96.0 0.686 E -105.5 -12.4 96.0 0.686 0.0 EB4
HOH
7.404
2.942
N
OG1
O8
O
THR B:124 B:104 90.0 0.643 E -97.2 -35.6 NA NA NA
THR C:124 C:104 97.0 0.693 E -101.3 -16.6 NA NA NA
3i0a 1 P80188 98.99 3e-147 X-RAY
2010-06-09 THR A:124 A:104 95.0 0.679 E -111.4 -20.1 95.0 0.679 0.0 2DS
HOH
7.981
4.759
N
O
O7
O
THR B:124 B:104 85.0 0.607 -88.2 -48.3 NA NA NA
THR C:124 C:104 95.0 0.679 E -105.0 -16.0 NA NA NA
3hwd 1 P80188 98.48 1e-146 X-RAY
2010-06-02 THR A:124 A:104 95.0 0.679 E -101.0 -16.5 95.0 0.679 0.0 HOH
5.393
CG2
O
THR B:124 B:104 90.0 0.643 E -93.7 -51.8 NA NA NA
THR C:124 C:104 95.0 0.679 E -101.4 -17.0 NA NA NA
3by0 1 P80188 98.48 9e-146 X-RAY
2008-09-09 THR A:124 A:104 99.0 0.707 E -107.2 -21.9 99.0 0.707 0.0 DBH
HOH
8.417
2.985
N
OG1
C12
O
THR B:124 B:104 96.0 0.686 E -96.9 -49.5 NA NA NA
THR C:124 C:104 96.0 0.686 E -107.1 -8.5 NA NA NA
1dfv 1 P80188 100.0 2e-132 X-RAY
2000-03-06 THR A:104 A:104 106.0 0.757 E -117.1 -10.2 106.0 0.757 0.0 HOH
4.839
OG1
O
THR B:104 B:104 90.0 0.643 E -104.7 -18.9 NA NA NA
1l6m 1 P80188 98.88 3e-132 X-RAY
2003-03-11 THR A:106 A:104 95.0 0.679 E -113.0 -16.6 95.0 0.679 0.0 DBH
HOH
8.210
6.587
N
C
C12
O
THR B:106 B:104 89.0 0.636 E -96.5 -30.6 NA NA NA
THR C:106 C:104 92.0 0.657 E -101.4 -6.6 NA NA NA
4k19 1 P80188 98.88 3e-132 X-RAY
2013-07-31 THR A:106 A:104 91.0 0.65 E -123.3 -18.5 91.0 0.65 0.0 1OD
HOH
8.278
4.456
N
O
C22
O
THR B:106 B:104 92.0 0.657 E -84.7 -53.7 NA NA NA
THR C:106 C:104 95.0 0.679 E -119.0 -5.3 NA NA NA
4zfx 1 P80188 98.88 3e-132 X-RAY
2015-08-05 THR A:106 A:104 95.0 0.679 E -103.5 -11.5 95.0 0.679 0.0
THR B:106 B:104 91.0 0.65 E -102.0 -11.7 91.0 0.65 0.0
THR C:106 C:104 94.0 0.671 E -102.2 -12.1 94.0 0.671 0.0
4zhc 1 P80188 98.88 3e-132 X-RAY
2015-08-05 THR A:106 A:104 97.0 0.693 E -113.3 -14.1 97.0 0.693 0.0 HOH
2.962
OG1
O
THR B:106 B:104 84.0 0.6 E -99.8 -32.3 NA NA NA
THR C:106 C:104 96.0 0.686 E -113.2 -13.9 NA NA NA
4zhd 1 P80188 98.88 3e-132 X-RAY
2015-08-05 THR A:106 A:104 98.0 0.7 E -112.6 -14.3 98.0 0.7 0.0 HOH
4.504
O
O
THR B:106 B:104 101.0 0.721 E -111.4 -14.9 NA NA NA
THR C:106 C:104 97.0 0.693 E -111.7 -13.8 NA NA NA
4zhf 1 P80188 98.88 3e-132 X-RAY
2015-08-05 THR A:106 A:104 89.0 0.636 E -113.5 -28.0 89.0 0.636 0.0 4OL
HOH
9.125
4.693
N
O
C43
O
THR B:106 B:104 92.0 0.657 E -115.0 -26.7 NA NA NA
THR C:106 C:104 93.0 0.664 E -114.2 -26.5 NA NA NA
THR D:106 D:104 91.0 0.65 E -113.7 -28.1 NA NA NA
THR E:106 E:104 98.0 0.7 E -107.7 -38.1 NA NA NA
THR F:106 F:104 94.0 0.671 E -108.4 -31.9 NA NA NA
4zhg 1 P80188 98.88 3e-132 X-RAY
2015-08-05 THR A:106 A:104 88.0 0.629 E -116.5 -24.4 88.0 0.629 0.0 4OL
HOH
9.134
4.743
N
O
C43
O
THR B:106 B:104 93.0 0.664 E -118.2 -21.1 NA NA NA
THR C:106 C:104 91.0 0.65 E -115.5 -21.6 NA NA NA
THR D:106 D:104 90.0 0.643 E -115.5 -26.3 NA NA NA
THR E:106 E:104 95.0 0.679 E -107.2 -38.0 NA NA NA
THR F:106 F:104 94.0 0.671 E -112.8 -27.8 NA NA NA
4zhh 1 P80188 98.88 3e-132 X-RAY
2015-08-05 THR A:106 A:104 90.0 0.643 E -117.0 -20.8 90.0 0.643 0.0 4OL
HOH
9.200
3.002
N
OG1
C43
O
THR B:106 B:104 88.0 0.629 E -116.2 -25.4 NA NA NA
THR C:106 C:104 91.0 0.65 E -115.3 -22.7 NA NA NA
THR D:106 D:104 93.0 0.664 E -114.3 -22.2 NA NA NA
THR E:106 E:104 91.0 0.65 E -105.4 -39.2 NA NA NA
THR F:106 F:104 87.0 0.621 E -114.2 -26.9 NA NA NA
5khp 1 P80188 98.88 3e-132 X-RAY
2017-04-26 THR A:106 A:104 92.0 0.657 E -117.1 -20.8 92.0 0.657 0.0 SO4
HOH
6.097
6.370
CG2
C
O1
O
THR B:106 B:104 93.0 0.664 E -118.5 -18.8 NA NA NA
THR C:106 C:104 93.0 0.664 E -117.7 -14.3 NA NA NA
5kic 1 P80188 98.88 3e-132 X-RAY
2017-04-26 THR A:106 A:104 97.0 0.693 E -109.6 -19.2 97.0 0.693 0.0 4OL
9.016
N
C43
THR B:106 B:104 93.0 0.664 E -108.3 -21.9 NA NA NA
THR C:106 C:104 99.0 0.707 E -109.2 -18.1 NA NA NA
5kid 1 P80188 98.88 3e-132 X-RAY
2017-04-26 THR A:106 A:104 96.0 0.686 E -108.8 -11.9 96.0 0.686 0.0 HOH
8.963
O
O
THR B:106 B:104 92.0 0.657 E -108.8 -11.8 NA NA NA
THR C:106 C:104 93.0 0.664 E -110.4 -12.3 NA NA NA
3tzs 1 P80188 98.88 4e-132 X-RAY
2011-10-12 THR A:105 A:104 98.0 0.7 E -113.8 -3.5 98.0 0.7 0.0 EDO
HOH
4.179
2.794
O
OG1
O1
O
THR B:105 B:104 91.0 0.65 E -97.1 -40.6 NA NA NA
THR C:105 C:104 98.0 0.7 E -113.8 -2.4 NA NA NA
1x71 1 P80188 99.44 5e-132 X-RAY
2005-01-18 THR A:104 A:104 101.0 0.721 E -113.9 -13.6 101.0 0.721 0.0 HOH
3.226
OG1
O
THR B:104 B:104 95.0 0.679 E -106.4 -20.7 NA NA NA
THR C:104 C:104 92.0 0.657 E -107.8 -8.7 NA NA NA
1x89 1 P80188 99.44 5e-132 X-RAY
2005-01-25 THR A:104 A:104 97.0 0.693 E -109.4 -15.2 97.0 0.693 0.0 HOH
4.659
O
O
THR B:104 B:104 93.0 0.664 E -98.4 -26.3 NA NA NA
THR C:104 C:104 92.0 0.657 E -108.3 -7.6 NA NA NA
1x8u 1 P80188 99.44 5e-132 X-RAY
2005-01-25 THR A:104 A:104 95.0 0.679 E -109.4 -16.3 95.0 0.679 0.0 HOH
4.458
O
O
THR B:104 B:104 89.0 0.636 E -99.6 -31.5 NA NA NA
THR C:104 C:104 94.0 0.671 E -110.1 -4.2 NA NA NA
3fw4 1 P80188 99.44 5e-132 X-RAY
2010-05-05 THR A:104 A:104 96.0 0.686 E -110.1 -10.7 96.0 0.686 0.0 CL
HOH
7.451
3.086
N
OG1
CL
O
THR B:104 B:104 79.0 NA S -112.3 -43.2 NA NA NA
THR C:104 C:104 99.0 0.707 E -110.5 -13.0 NA NA NA
3fw5 1 P80188 99.44 5e-132 X-RAY
2010-05-05 THR A:104 A:104 101.0 0.721 E -109.3 -14.3 101.0 0.721 0.0 HOH
2.718
OG1
O
THR B:104 B:104 71.0 NA E -95.3 -42.4 NA NA NA
THR C:104 C:104 97.0 0.693 E -111.0 -8.5 NA NA NA
3k3l 1 P80188 99.44 5e-132 X-RAY
2010-08-18 THR A:104 A:104 92.0 0.657 E -115.7 -17.4 92.0 0.657 0.0 DBH
HOH
8.400
2.788
N
OG1
C12
O
THR B:104 B:104 72.0 NA E -80.3 -46.9 NA NA NA
THR C:104 C:104 97.0 0.693 E -98.4 -11.3 NA NA NA
3pec 1 P80188 99.44 5e-132 X-RAY
2011-10-05 THR A:104 A:104 99.0 0.707 E -110.8 -9.2 99.0 0.707 0.0 HOH
3.067
OG1
O
THR B:104 B:104 92.0 0.657 E -84.9 -48.8 NA NA NA
THR C:104 C:104 96.0 0.686 E -107.9 -13.8 NA NA NA
3ped 1 P80188 99.44 5e-132 X-RAY
2011-10-05 THR A:104 A:104 96.0 0.686 E -120.2 -4.0 96.0 0.686 0.0 HOH
2.693
OG1
O
THR B:104 B:104 97.0 0.693 E -105.1 -27.6 NA NA NA
THR C:104 C:104 94.0 0.671 E -107.5 -16.9 NA NA NA
3tf6 1 P80188 98.88 5e-132 X-RAY
2011-09-07 THR A:105 A:104 92.0 0.657 E -110.5 -10.4 92.0 0.657 0.0 HOH
2.884
OG1
O
THR B:105 B:104 95.0 0.679 E -110.0 -13.1 NA NA NA
THR C:105 C:104 94.0 0.671 E -109.8 -10.8 NA NA NA
6o5d 1 P80188 99.43 7e-129 X-RAY
2019-09-11 THR A:100 A:104 97.0 0.693 E -108.3 -9.8 97.0 0.693 0.0 HOH
3.087
OG1
O
THR B:100 B:104 98.0 0.7 E -109.9 -9.7 NA NA NA
THR C:100 C:104 98.0 0.7 E -110.6 -9.1 NA NA NA
5mhh 1 P80188 96.63 1e-127 X-RAY
2017-10-11 THR A:104 A:104 83.0 0.593 E -103.8 -16.9 83.0 0.593 0.0
6qmu 1 P80188 96.63 1e-127 X-RAY
2019-08-28 THR A:104 A:104 100.0 0.714 E -100.7 -16.0 100.0 0.714 0.0 HOH
4.788
N
O
THR B:104 B:104 102.0 0.729 E -106.5 -17.9 NA NA NA
3t1d 1 P80188 97.78 1e-120 X-RAY
2011-08-17 THR A:124 A:104 97.0 0.693 E -113.1 -12.7 97.0 0.693 0.0 GOL
HOH
4.335
2.638
O
OG1
O1
O
THR B:124 B:104 99.0 0.707 E -115.0 -8.5 NA NA NA
THR C:124 C:104 96.0 0.686 E -109.6 -17.7 NA NA NA
3dsz 1 ? 91.57 4e-120 X-RAY
2009-05-19 THR A:104 A:104 96.0 0.686 E -121.2 -15.8 96.0 0.686 0.0 HOH
2.723
O
O
THR B:104 B:104 93.0 0.664 E -108.0 -13.2 NA NA NA
3dtq 1 P80188 91.57 4e-120 X-RAY
2009-05-12 THR A:104 A:104 100.0 0.714 E -107.2 -5.5 100.0 0.714 0.0 HOH
2.806
CA
O
THR B:104 B:104 103.0 0.736 E -102.1 -19.8 NA NA NA
THR C:104 C:104 92.0 0.657 E -111.2 -1.3 NA NA NA
5n47 1 P80188 90.45 6e-118 X-RAY
2018-02-14 THR A:104 A:104 28.0 0.2 -78.5 137.1 27.0 0.193 0.007 B:P02751:0.007
THR C:104 C:104 26.0 0.186 -94.1 138.1 NA NA NA
THR E:104 E:104 27.0 0.193 -92.1 143.6 NA NA NA
1qqs 1 P80188 97.7 4e-116 X-RAY
2000-04-21 THR A:101 A:104 94.0 0.671 E -114.3 -13.0 94.0 0.671 0.0 DKA
NAG
NAG
MAN
HOH
8.762
9.448
9.689
9.803
2.980
N
CG2
CG2
N
CG2
C10
O6
C3
O2
O
5jr8 1 P80188 94.38 3e-115 X-RAY
2016-09-28 THR A:104 A:104 101.0 0.721 E -82.4 -41.1 101.0 0.721 0.0 HOH
4.852
N
O
THR B:104 B:104 102.0 0.729 E -78.1 -42.7 NA NA NA
4mvl 1 P80188 89.33 1e-114 X-RAY
2015-08-12 THR A:104 A:104 33.0 0.236 -96.2 101.5 20.0 0.143 0.093 E:P05067:0.093
HOH
6.380
C
O
THR B:104 B:104 42.0 0.3 -122.9 121.8 NA NA NA
THR C:104 C:104 26.0 0.186 -88.1 144.5 NA NA NA
THR D:104 D:104 33.0 0.236 -136.7 149.3 NA NA NA
4mvi 1 P80188 89.33 9e-114 X-RAY
2015-08-12 THR A:104 A:104 41.0 0.293 E -103.0 147.6 14.0 0.1 0.193 B:P05067:0.193
HOH
3.819
C
O
4mvk 1 P80188 89.33 9e-114 X-RAY
2015-08-12 THR A:104 A:104 46.0 0.329 E -125.6 138.0 41.0 0.293 0.036 B:P05067:0.036
HOH
2.822
O
O
5n48 1 P80188 88.2 1e-113 X-RAY
2018-02-14 THR A:104 A:104 89.0 0.636 S -76.9 -27.0 89.0 0.636 0.0 HOH
2.887
O
O
THR C:104 C:104 71.0 0.507 S -60.6 -37.6 NA NA NA
4gh7 1 P80188 88.2 1e-113 X-RAY
2012-12-26 THR A:104 A:104 106.0 0.757 E -102.3 -10.3 106.0 0.757 0.0 HOH
2.966
OG1
O
THR C:104 C:104 104.0 0.743 E -97.2 -22.4 NA NA NA
6s8v 1 P80188 88.2 9e-113 X-RAY
2020-03-04 THR A:104 A:104 45.0 0.321 -79.7 134.0 5.0 0.036 0.285 B:P08195:0.286
HOH
3.505
OG1
O
THR C:104 C:104 45.0 0.321 -81.4 149.4 NA NA NA
6sua 1 P80188 88.76 2e-112 X-RAY
2020-06-17 THR A:104 A:104 41.0 0.293 S -101.7 0.3 41.0 0.293 0.0 SO4
SO4
4.440
9.706
CG2
N
O1
O3
THR C:104 C:104 41.0 0.293 S -101.8 -0.6 NA NA NA
4iaw 1 P80188 87.08 3e-112 X-RAY
2013-06-19 THR A:104 A:104 90.0 0.643 E -114.3 -12.4 90.0 0.643 0.0 HOH
2.600
OG1
O
THR B:104 B:104 98.0 0.7 E -108.6 -11.2 NA NA NA
THR C:104 C:104 95.0 0.679 E -77.9 -49.3 NA NA NA
6z2c 1 P80188 88.2 4e-111 X-RAY
2021-05-26 THR A:104 A:104 117.0 0.836 -147.5 -6.9 117.0 0.836 0.0 Q5E
HOH
8.101
2.582
N
O
OAY
O
THR B:104 B:104 94.0 0.671 -95.5 -72.7 NA NA NA
THR C:104 C:104 119.0 0.85 -105.9 -11.9 NA NA NA
6z6z 1 P80188 86.52 3e-110 X-RAY
2021-06-09 THR A:105 A:104 20.0 0.143 -141.8 135.6 20.0 0.143 0.0 CA
HOH
2.286
3.262
O
OG1
CA
O
4qae 2 P80188 85.39 3e-109 X-RAY
2015-05-06 THR G:104 A:104 97.0 0.693 -77.7 128.5 16.0 0.114 0.579 A:P81172:0.579
HOH
2.617
OG1
O
THR H:104 B:104 94.0 0.671 -79.5 129.7 NA NA NA
THR I:104 NA:NA DO NA DO DO DO NA NA NA
THR J:104 D:104 155.0 1.0 360.0 119.4 NA NA NA
THR K:104 E:104 154.0 1.0 360.0 122.2 NA NA NA
THR L:104 F:104 155.0 1.0 360.0 129.0 NA NA NA
3bx7 2 ? 83.15 4e-108 X-RAY
2009-01-20 THR B:104 A:104 28.0 0.2 -107.2 132.4 25.0 0.179 0.021 A:P16410:0.021
HOH
6.445
C
O
3bx8 1 ? 83.15 4e-108 X-RAY
2009-01-20 THR A:104 NA:NA DO NA DO DO DO NA NA NA
THR B:104 B:104 127.0 0.907 360.0 -163.7 NA NA NA
THR C:104 NA:NA DO NA DO DO DO NA NA NA
THR D:104 D:104 83.0 0.593 360.0 -169.9 NA NA NA
THR E:104 E:104 152.0 1.0 360.0 -142.3 NA NA NA
THR F:104 NA:NA DO NA DO DO DO NA NA NA
THR G:104 NA:NA DO NA DO DO DO NA NA NA
THR H:104 H:104 143.0 1.0 360.0 126.9 NA NA NA
5nkn 1 P80188 86.21 2e-106 X-RAY
2018-04-04 THR A:100 A:104 22.0 0.157 -153.2 156.4 22.0 0.157 0.0 LOC
HOH
5.768
9.734
O
CG2
C10
O
6gqz 1 P80188 85.63 7e-106 X-RAY
2018-08-15 THR A:100 A:104 104.0 0.743 E -118.2 -10.2 104.0 0.743 0.0 HOH
2.601
OG1
O
THR B:100 B:104 103.0 0.736 E -112.6 -16.1 NA NA NA
6gr0 1 P80188 85.63 7e-106 X-RAY
2018-08-15 THR A:100 A:104 103.0 0.736 E -107.1 -7.5 103.0 0.736 0.0 F8W
HOH
9.649
4.643
N
O
OAY
O
THR B:100 B:104 102.0 0.729 E -109.4 -4.3 NA NA NA
THR C:100 C:104 106.0 0.757 E -108.3 -5.1 NA NA NA
4iax 1 P80188 81.46 3e-103 X-RAY
2013-06-19 THR A:104 A:104 88.0 0.629 E -111.8 -16.6 88.0 0.629 0.0 HOH
2.705
OG1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p80188-f1 1 P80188 100.0 1e-149 THR A:124 A:124 92.0 0.657 E -106.1 -23.7