Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 130914506 . C A CCDS6892.1:NM_005564.3:c.520Cgc>Agc_NP_005555.2:p.174R>S Homo sapiens lipocalin 2 (LCN2), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hwe 1 P80188 99.49 4e-148 X-RAY
2010-06-02 ARG A:174 A:154 157.0 0.698 H -77.7 -28.9 157.0 0.698 0.0 HOH
2.696
O
O
ARG B:174 B:154 65.0 NA H -56.1 -40.9 NA NA NA
ARG C:174 C:154 173.0 0.769 H -65.1 -37.4 NA NA NA
3hwf 1 P80188 99.49 4e-148 X-RAY
2010-06-02 ARG A:174 A:154 166.0 0.738 H -61.9 -50.4 166.0 0.738 0.0
ARG B:174 B:154 63.0 NA H -60.9 -32.4 NA NA NA
ARG C:174 C:154 171.0 0.76 H -66.3 -43.8 NA NA NA
3hwg 1 P80188 99.49 4e-148 X-RAY
2010-06-02 ARG A:174 A:154 144.0 0.64 H -58.6 -44.5 144.0 0.64 0.0 HOH
2.721
O
O
ARG B:174 B:154 113.0 NA H -69.1 -21.7 NA NA NA
ARG C:174 C:154 105.0 NA H -56.9 -47.3 NA NA NA
3u0d 1 P80188 99.49 4e-148 X-RAY
2011-10-12 ARG A:174 A:154 62.0 NA H -62.4 -42.6 62.0 NA NA HOH
4.375
N
O
ARG B:174 B:154 145.0 0.644 H -45.5 -49.0 NA NA NA
ARG C:174 C:154 61.0 NA H -48.8 -49.8 NA NA NA
ARG D:174 D:154 152.0 0.676 H -63.5 -47.8 NA NA NA
3cbc 1 P80188 98.99 1e-147 X-RAY
2008-09-09 ARG A:174 A:154 152.0 0.676 H -75.1 -30.0 NA NA NA
ARG B:174 B:154 157.0 0.698 H -60.8 -44.7 157.0 0.698 0.0 HOH
8.848
NH2
O
ARG C:174 C:154 146.0 0.649 H -61.8 -41.5 NA NA NA
3cmp 1 P80188 98.99 3e-147 X-RAY
2009-05-12 ARG A:174 A:154 79.0 NA H -62.0 -48.2 79.0 NA NA HOH
2.711
O
O
ARG B:174 B:154 78.0 NA H -62.7 -34.5 NA NA NA
ARG C:174 C:154 148.0 0.658 H -64.3 -44.3 NA NA NA
3i0a 1 P80188 98.99 3e-147 X-RAY
2010-06-09 ARG A:174 A:154 149.0 0.662 H -63.3 -36.5 149.0 0.662 0.0 HOH
5.041
CG
O
ARG B:174 B:154 62.0 NA H -75.2 -35.7 NA NA NA
ARG C:174 C:154 149.0 NA H -61.0 -35.8 NA NA NA
3hwd 1 P80188 98.48 1e-146 X-RAY
2010-06-02 ARG A:174 A:154 141.0 0.627 H -63.5 -45.3 141.0 0.627 0.0 HOH
2.674
O
O
ARG B:174 B:154 64.0 NA H -70.6 -38.7 NA NA NA
ARG C:174 C:154 150.0 0.667 H -63.6 -44.8 NA NA NA
3by0 1 P80188 98.48 9e-146 X-RAY
2008-09-09 ARG A:174 A:154 148.0 0.658 H -66.2 -37.7 148.0 0.658 0.0 HOH
7.166
CG
O
ARG B:174 B:154 160.0 0.711 H -62.7 -39.4 NA NA NA
ARG C:174 C:154 148.0 0.658 H -63.3 -39.9 NA NA NA
1dfv 1 P80188 100.0 2e-132 X-RAY
2000-03-06 ARG A:154 A:154 153.0 0.68 H -61.5 -47.9 153.0 0.68 0.0 HOH
3.023
NH2
O
ARG B:154 B:154 131.0 0.582 H -61.3 -43.1 NA NA NA
1l6m 1 P80188 98.88 3e-132 X-RAY
2003-03-11 ARG A:156 A:154 191.0 0.849 H -56.2 -50.8 191.0 0.849 0.0
ARG B:156 B:154 181.0 0.804 H -61.0 -17.0 NA NA NA
ARG C:156 C:154 167.0 0.742 H -66.5 -47.4 NA NA NA
4k19 1 P80188 98.88 3e-132 X-RAY
2013-07-31 ARG A:156 A:154 152.0 0.676 H -55.7 -51.4 152.0 0.676 0.0 HOH
2.966
O
O
ARG B:156 B:154 70.0 NA H -60.2 -37.4 NA NA NA
ARG C:156 C:154 139.0 0.618 H -62.9 -41.4 NA NA NA
4zfx 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ARG A:156 A:154 151.0 0.671 H -60.6 -44.5 123.0 0.547 0.124 B:P80188:0.124
ARG B:156 B:154 166.0 0.738 H -64.9 -38.5 105.0 0.467 0.271 A:P80188:0.271
ARG C:156 C:154 135.0 0.6 H -61.5 -41.9 135.0 0.6 0.0
4zhc 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ARG A:156 A:154 149.0 0.662 H -57.1 -45.3 149.0 0.662 0.0
ARG B:156 B:154 145.0 0.644 H -57.3 -44.8 NA NA NA
ARG C:156 C:154 150.0 0.667 H -56.2 -44.6 NA NA NA
4zhd 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ARG A:156 A:154 146.0 0.649 H -59.6 -46.1 146.0 0.649 0.0 HOH
2.782
O
O
ARG B:156 B:154 146.0 0.649 H -60.6 -43.4 NA NA NA
ARG C:156 C:154 151.0 0.671 H -58.5 -44.1 NA NA NA
4zhf 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ARG A:156 A:154 148.0 0.658 H -57.2 -48.4 148.0 0.658 0.0 HOH
2.840
O
O
ARG B:156 B:154 143.0 0.636 H -58.5 -47.7 NA NA NA
ARG C:156 C:154 158.0 0.702 H -59.1 -47.7 NA NA NA
ARG D:156 D:154 139.0 0.618 H -57.2 -47.9 NA NA NA
ARG E:156 E:154 143.0 0.636 H -59.3 -47.8 NA NA NA
ARG F:156 F:154 146.0 0.649 H -58.5 -47.6 NA NA NA
4zhg 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ARG A:156 A:154 148.0 0.658 H -61.1 -45.0 148.0 0.658 0.0 HOH
2.745
O
O
ARG B:156 B:154 143.0 0.636 H -60.3 -44.6 NA NA NA
ARG C:156 C:154 156.0 0.693 H -60.9 -45.1 NA NA NA
ARG D:156 D:154 142.0 0.631 H -60.8 -45.2 NA NA NA
ARG E:156 E:154 145.0 0.644 H -61.8 -47.1 NA NA NA
ARG F:156 F:154 148.0 0.658 H -61.0 -46.3 NA NA NA
4zhh 1 P80188 98.88 3e-132 X-RAY
2015-08-05 ARG A:156 A:154 151.0 0.671 H -58.8 -45.6 151.0 0.671 0.0 HOH
2.648
O
O
ARG B:156 B:154 133.0 0.591 H -60.6 -44.2 NA NA NA
ARG C:156 C:154 143.0 0.636 H -60.8 -46.0 NA NA NA
ARG D:156 D:154 151.0 0.671 H -59.6 -45.6 NA NA NA
ARG E:156 E:154 147.0 0.653 H -58.6 -47.5 NA NA NA
ARG F:156 F:154 150.0 0.667 H -58.9 -46.2 NA NA NA
5khp 1 P80188 98.88 3e-132 X-RAY
2017-04-26 ARG A:156 A:154 217.0 0.964 H -54.0 -47.6 217.0 0.964 0.0
ARG B:156 B:154 64.0 NA H -56.8 -43.9 NA NA NA
ARG C:156 C:154 182.0 0.809 H -56.8 -45.2 NA NA NA
5kic 1 P80188 98.88 3e-132 X-RAY
2017-04-26 ARG A:156 A:154 138.0 0.613 H -61.5 -45.6 138.0 0.613 0.0
ARG B:156 B:154 61.0 NA H -61.0 -46.2 NA NA NA
ARG C:156 C:154 147.0 0.653 H -61.5 -46.5 NA NA NA
5kid 1 P80188 98.88 3e-132 X-RAY
2017-04-26 ARG A:156 A:154 153.0 0.68 H -53.5 -49.4 153.0 0.68 0.0 HOH
8.014
N
O
ARG B:156 B:154 54.0 NA H -55.7 -47.6 NA NA NA
ARG C:156 C:154 151.0 0.671 H -55.6 -47.4 NA NA NA
3tzs 1 P80188 98.88 4e-132 X-RAY
2011-10-12 ARG A:155 A:154 154.0 0.684 H -60.4 -45.6 154.0 0.684 0.0 HOH
6.510
O
O
ARG B:155 B:154 59.0 NA H -63.4 -41.0 NA NA NA
ARG C:155 C:154 61.0 NA H -61.3 -40.5 NA NA NA
1x71 1 P80188 99.44 5e-132 X-RAY
2005-01-18 ARG A:154 A:154 144.0 0.64 H -65.1 -42.9 144.0 0.64 0.0 HOH
6.390
O
O
ARG B:154 B:154 188.0 0.836 H -61.2 -45.6 NA NA NA
ARG C:154 C:154 140.0 0.622 H -63.1 -40.0 NA NA NA
1x89 1 P80188 99.44 5e-132 X-RAY
2005-01-25 ARG A:154 A:154 145.0 0.644 H -65.2 -43.0 145.0 0.644 0.0 HOH
2.797
O
O
ARG B:154 B:154 63.0 NA H -65.0 -38.5 NA NA NA
ARG C:154 C:154 169.0 0.751 H -64.8 -43.1 NA NA NA
1x8u 1 P80188 99.44 5e-132 X-RAY
2005-01-25 ARG A:154 A:154 149.0 0.662 H -66.4 -40.6 149.0 0.662 0.0 HOH
2.811
O
O
ARG B:154 B:154 42.0 NA H -56.9 -48.6 NA NA NA
ARG C:154 C:154 61.0 NA H -61.9 -42.9 NA NA NA
3fw4 1 P80188 99.44 5e-132 X-RAY
2010-05-05 ARG A:154 A:154 153.0 0.68 H -62.0 -49.2 153.0 0.68 0.0 HOH
2.840
O
O
ARG B:154 NA:NA DO NA DO DO DO NA NA NA
ARG C:154 C:154 155.0 0.689 H -56.8 -44.8 NA NA NA
3fw5 1 P80188 99.44 5e-132 X-RAY
2010-05-05 ARG A:154 A:154 152.0 0.676 H -73.4 -32.3 152.0 0.676 0.0 HOH
2.746
O
O
ARG B:154 B:154 62.0 NA H -63.1 -38.9 NA NA NA
ARG C:154 C:154 144.0 0.64 H -55.2 -44.5 NA NA NA
3k3l 1 P80188 99.44 5e-132 X-RAY
2010-08-18 ARG A:154 A:154 165.0 0.733 H -55.4 -52.5 165.0 0.733 0.0 HOH
5.596
N
O
ARG B:154 B:154 73.0 NA H -58.7 -42.6 NA NA NA
ARG C:154 C:154 137.0 0.609 H -66.3 -39.2 NA NA NA
3pec 1 P80188 99.44 5e-132 X-RAY
2011-10-05 ARG A:154 A:154 149.0 0.662 H -59.3 -44.1 149.0 0.662 0.0 SO4
HOH
6.187
2.708
N
O
O3
O
ARG B:154 B:154 59.0 NA H -61.8 -41.1 NA NA NA
ARG C:154 C:154 147.0 0.653 H -62.7 -40.8 NA NA NA
3ped 1 P80188 99.44 5e-132 X-RAY
2011-10-05 ARG A:154 A:154 122.0 NA H -60.1 -43.3 122.0 NA NA HOH
6.312
O
O
ARG B:154 B:154 139.0 NA H -58.0 -44.4 NA NA NA
ARG C:154 C:154 58.0 NA H -61.4 -42.7 NA NA NA
3tf6 1 P80188 98.88 5e-132 X-RAY
2011-09-07 ARG A:155 A:154 60.0 NA H -61.1 -43.5 60.0 NA NA HOH
2.737
O
O
ARG B:155 B:154 60.0 NA H -62.3 -42.5 NA NA NA
ARG C:155 C:154 60.0 NA H -62.2 -42.3 NA NA NA
6o5d 1 P80188 99.43 7e-129 X-RAY
2019-09-11 ARG A:150 A:154 152.0 0.676 H -54.3 -47.9 152.0 0.676 0.0
ARG B:150 B:154 59.0 NA H -53.3 -48.2 NA NA NA
ARG C:150 C:154 156.0 0.693 H -53.1 -48.7 NA NA NA
5mhh 1 P80188 96.63 1e-127 X-RAY
2017-10-11 ARG A:154 A:154 145.0 0.644 H -53.9 -50.2 145.0 0.644 0.0 HOH
3.764
CG
O
6qmu 1 P80188 96.63 1e-127 X-RAY
2019-08-28 ARG A:154 A:154 155.0 0.689 H -55.8 -52.7 155.0 0.689 0.0 HOH
2.809
O
O
ARG B:154 B:154 142.0 0.631 H -57.7 -52.3 NA NA NA
3t1d 1 P80188 97.78 1e-120 X-RAY
2011-08-17 ARG A:174 A:154 155.0 0.689 H -54.7 -45.5 155.0 0.689 0.0 HOH
2.652
O
O
ARG B:174 B:154 149.0 0.662 H -58.9 -45.5 NA NA NA
ARG C:174 C:154 188.0 0.836 H -57.2 -45.4 NA NA NA
3dsz 1 ? 91.57 4e-120 X-RAY
2009-05-19 ARG A:154 A:154 135.0 0.6 H -68.9 -31.8 135.0 0.6 0.0 HOH
2.791
O
O
ARG B:154 B:154 142.0 0.631 H -58.0 -49.7 NA NA NA
3dtq 1 P80188 91.57 4e-120 X-RAY
2009-05-12 ARG A:154 A:154 142.0 0.631 H -64.0 -45.1 142.0 0.631 0.0 HOH
2.699
NH2
O
ARG B:154 B:154 148.0 0.658 H -53.9 -42.6 NA NA NA
ARG C:154 C:154 170.0 0.756 H -60.2 -46.7 NA NA NA
5n47 1 P80188 90.45 6e-118 X-RAY
2018-02-14 ARG A:154 A:154 140.0 0.622 H -53.4 -49.5 140.0 0.622 0.0
ARG C:154 C:154 147.0 0.653 H -60.2 -40.7 NA NA NA
ARG E:154 E:154 147.0 0.653 H -61.2 -36.2 NA NA NA
1qqs 1 P80188 97.7 4e-116 X-RAY
2000-04-21 ARG A:151 A:154 141.0 0.627 H -63.6 -46.3 141.0 0.627 0.0 HOH
3.264
NH2
O
5jr8 1 P80188 94.38 3e-115 X-RAY
2016-09-28 ARG A:154 A:154 150.0 0.667 H -65.9 -40.6 150.0 0.667 0.0 HOH
2.725
O
O
ARG B:154 B:154 154.0 0.684 H -62.0 -43.7 NA NA NA
4mvl 1 P80188 89.33 1e-114 X-RAY
2015-08-12 ARG A:154 A:154 152.0 0.676 H -63.6 -39.1 152.0 0.676 0.0 HOH
2.665
NH1
O
ARG B:154 B:154 152.0 0.676 H -61.3 -34.9 NA NA NA
ARG C:154 C:154 149.0 0.662 H -53.9 -44.9 NA NA NA
ARG D:154 D:154 182.0 0.809 H -68.5 -41.0 NA NA NA
4mvi 1 P80188 89.33 9e-114 X-RAY
2015-08-12 ARG A:154 A:154 131.0 0.582 H -59.9 -49.4 131.0 0.582 0.0 HOH
2.622
O
O
4mvk 1 P80188 89.33 9e-114 X-RAY
2015-08-12 ARG A:154 A:154 132.0 0.587 H -61.3 -45.7 132.0 0.587 0.0 HOH
2.712
O
O
5n48 1 P80188 88.2 1e-113 X-RAY
2018-02-14 ARG A:154 A:154 123.0 0.547 H -65.8 -39.0 123.0 0.547 0.0 HOH
2.851
O
O
ARG C:154 C:154 180.0 0.8 H -61.4 -44.9 NA NA NA
4gh7 1 P80188 88.2 1e-113 X-RAY
2012-12-26 ARG A:154 A:154 149.0 0.662 H -56.4 -47.7 149.0 0.662 0.0 HOH
5.440
NH1
O
ARG C:154 C:154 163.0 0.724 H -56.0 -47.4 NA NA NA
6s8v 1 P80188 88.2 9e-113 X-RAY
2020-03-04 ARG A:154 A:154 138.0 0.613 H -65.1 -45.8 138.0 0.613 0.0 EDO
HOH
7.303
2.709
NH1
NH2
O1
O
ARG C:154 C:154 151.0 0.671 H -57.1 -47.7 NA NA NA
6sua 1 P80188 88.76 2e-112 X-RAY
2020-06-17 ARG A:154 A:154 149.0 0.662 H -52.9 -50.4 149.0 0.662 0.0
ARG C:154 C:154 143.0 0.636 H -53.3 -50.2 NA NA NA
4iaw 1 P80188 87.08 3e-112 X-RAY
2013-06-19 ARG A:154 A:154 152.0 0.676 H -64.3 -43.1 152.0 0.676 0.0 HOH
4.933
CG
O
ARG B:154 B:154 151.0 0.671 H -68.6 -34.6 NA NA NA
ARG C:154 C:154 143.0 0.636 H -53.6 -52.2 NA NA NA
6z2c 1 P80188 88.2 4e-111 X-RAY
2021-05-26 ARG A:154 A:154 140.0 0.622 H -60.0 -46.3 140.0 0.622 0.0 HOH
2.933
O
O
ARG B:154 B:154 139.0 0.618 H -59.2 -46.5 NA NA NA
ARG C:154 C:154 164.0 0.729 H -62.3 -45.9 NA NA NA
6z6z 1 P80188 86.52 3e-110 X-RAY
2021-06-09 ARG A:155 A:154 137.0 0.609 H -59.1 -54.9 137.0 0.609 0.0 HOH
8.287
NH2
O
4qae 2 P80188 85.39 3e-109 X-RAY
2015-05-06 ARG G:154 A:154 143.0 0.636 H -65.2 -40.6 143.0 0.636 0.0 HOH
6.372
O
O
ARG H:154 B:154 132.0 0.587 H -56.4 -44.8 NA NA NA
ARG I:154 C:154 149.0 0.662 H -54.0 -51.0 NA NA NA
ARG J:154 D:154 144.0 0.64 H -59.1 -47.4 NA NA NA
ARG K:154 E:154 145.0 0.644 H -54.4 -50.3 NA NA NA
ARG L:154 F:154 140.0 0.622 H -62.2 -45.6 NA NA NA
3bx7 2 ? 83.15 4e-108 X-RAY
2009-01-20 ARG B:154 A:154 144.0 0.64 H -63.2 -41.7 144.0 0.64 0.0 HOH
6.342
O
O
3bx8 1 ? 83.15 4e-108 X-RAY
2009-01-20 ARG A:154 A:154 135.0 0.6 H -65.7 -42.8 135.0 0.6 0.0 HOH
7.231
N
O
ARG B:154 B:154 137.0 0.609 H -63.0 -42.7 NA NA NA
ARG C:154 C:154 138.0 0.613 H -63.9 -39.3 NA NA NA
ARG D:154 D:154 136.0 0.604 H -62.4 -39.4 NA NA NA
ARG E:154 E:154 168.0 0.747 H -63.4 -43.4 NA NA NA
ARG F:154 F:154 166.0 0.738 H -63.6 -41.8 NA NA NA
ARG G:154 G:154 175.0 0.778 H -65.5 -42.6 NA NA NA
ARG H:154 H:154 132.0 0.587 H -61.0 -45.9 NA NA NA
5nkn 1 P80188 86.21 2e-106 X-RAY
2018-04-04 ARG A:150 A:154 137.0 0.609 H -69.5 -43.6 137.0 0.609 0.0 HOH
2.697
O
O
6gqz 1 P80188 85.63 7e-106 X-RAY
2018-08-15 ARG A:150 A:154 150.0 0.667 H -58.4 -47.3 150.0 0.667 0.0 HOH
3.510
NH1
O
ARG B:150 B:154 129.0 0.573 H -56.3 -50.0 NA NA NA
6gr0 1 P80188 85.63 7e-106 X-RAY
2018-08-15 ARG A:150 A:154 142.0 0.631 H -59.6 -44.2 142.0 0.631 0.0
ARG B:150 B:154 140.0 0.622 H -58.6 -45.1 NA NA NA
ARG C:150 C:154 140.0 0.622 H -59.1 -44.8 NA NA NA
4iax 1 P80188 81.46 3e-103 X-RAY
2013-06-19 ARG A:154 A:154 144.0 0.64 H -51.6 -53.6 144.0 0.64 0.0 HOH
2.746
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p80188-f1 1 P80188 100.0 1e-149 ARG A:174 A:174 162.0 0.72 H -59.2 -46.6