Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 15469326 . T A CCDS6479.1:NM_001128217.1:c.1042Atg>Ttg_NP_001121689.1:p.348M>L Homo sapiens PC4 and SFRS1 interacting protein 1 (PSIP1), transcript variant 2, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6s01 7 O75475 100.0 0.0 EM
 2019-12-18 MET K:348 NA:NA DO NA DO DO DO NA NA NA
6tvm 1 O75475 100.0 4e-84 NMR
 2020-09-09 MET A:9 A:348 51.0 0.276 H -53.6 -37.7 51.0 0.276 0.0
MET B:9 B:348 53.0 0.286 H -53.2 -37.4 53.0 0.286 0.0
2mtn 1 Q03164,O75475 100.0 1e-68 NMR
 2014-12-03 MET A:70 A:348 43.0 0.232 -105.1 27.4 43.0 0.232 0.0
6emq 1 O75475,Q03164 100.0 2e-65 NMR
 2018-08-01 MET A:10 A:348 7.0 0.038 H -65.8 -41.2 7.0 0.038 0.0
6emr 1 O75475,Q96ST2 93.46 4e-65 NMR
 2018-07-25 MET A:10 A:348 22.0 0.119 H -53.0 -43.1 22.0 0.119 0.0
5yi9 1 O75475,Q96GN5 100.0 1e-64 NMR
 2018-08-15 MET A:10 A:348 35.0 0.189 H -70.2 -40.7 35.0 0.189 0.0
6emp 1 O75475,Q7Z3K3 100.0 6e-64 NMR
 2018-07-25 MET A:10 A:348 52.0 0.281 H -71.5 -39.8 52.0 0.281 0.0
6emo 1 O75475,Q96GN5 95.28 6e-64 NMR
 2018-07-25 MET A:10 A:348 33.0 0.178 H -62.9 -34.7 33.0 0.178 0.0
2b4j 2 O75475 98.97 2e-63 X-RAY
 2005-10-25 MET C:4 C:348 13.0 0.07 H -68.1 -37.8 13.0 0.07 0.0 GOL
HOH
 7.188
3.075
 O
N
 O2
O
MET D:4 D:348 16.0 0.086 H -65.5 -39.5 16.0 0.086 0.0 GOL
HOH
 6.954
3.052
 O
N
 O2
O
3f9k 2 O75475 98.89 2e-58 X-RAY
 2009-01-20 MET C:2 C:348 47.0 0.254 H -82.4 -36.3 47.0 0.254 0.0
MET F:2 G:348 42.0 0.227 H -82.1 -36.5 NA NA NA
MET I:2 K:348 49.0 0.265 H -81.7 -36.3 NA NA NA
MET L:2 O:348 47.0 0.254 H -81.9 -36.9 NA NA NA
MET O:2 S:348 44.0 0.238 H -81.9 -36.3 NA NA NA
MET R:2 W:348 44.0 0.238 H -81.9 -36.3 NA NA NA
MET U:2 a:348 48.0 0.259 H -82.0 -36.4 NA NA NA
MET X:2 e:348 42.0 0.227 H -82.8 -35.8 NA NA NA
MET AA:2 i:348 47.0 0.254 H -82.3 -36.7 NA NA NA
MET DA:2 m:348 45.0 0.243 H -81.3 -36.7 NA NA NA
MET GA:2 q:348 48.0 0.259 H -81.5 -36.7 NA NA NA
MET JA:2 u:348 49.0 0.265 H -81.2 -37.0 NA NA NA
3hpg 2 O75475 98.89 2e-58 X-RAY
 2009-07-28 MET G:2 G:348 88.0 0.476 360.0 -22.5 88.0 0.476 0.0
MET H:2 H:348 60.0 0.324 H -63.9 -19.8 60.0 0.324 0.0
MET I:2 I:348 110.0 0.595 360.0 -21.8 NA NA NA
MET J:2 J:348 54.0 0.292 H -63.9 -21.7 NA NA NA
MET K:2 K:348 105.0 0.568 H -55.2 -20.5 105.0 0.568 0.0
MET L:2 L:348 98.0 0.53 360.0 -23.6 98.0 0.53 0.0
3u88 3 O75475 100.0 3e-58 X-RAY
 2012-02-15 MET D:2 C:348 75.0 0.405 360.0 -31.2 75.0 0.405 0.0
MET F:2 NA:NA DO NA DO DO DO NA NA NA
3hph 2 O75475 98.88 9e-58 X-RAY
 2009-07-28 MET E:1 E:348 59.0 0.319 360.0 -40.0 59.0 0.319 0.0 HOH
 7.716
 CE
 O
MET F:1 NA:NA DO NA DO DO DO NA NA NA
MET G:1 NA:NA DO NA DO DO DO NA NA NA
MET H:1 H:348 61.0 0.33 360.0 -38.3 61.0 0.33 0.0 HOH
 8.253
 O
 O
5oym 1 O75475 100.0 2e-57 X-RAY
 2018-03-07 MET A:28 H:348 22.0 0.119 H -66.2 -34.1 18.0 0.097 0.022 E:O75475:0.022
 HOH
 3.010
 N
 O
MET B:28 G:348 18.0 0.097 H -70.2 -37.0 18.0 0.097 0.0 HOH
 3.172
 N
 O
MET C:28 A:348 19.0 0.103 H -65.1 -39.2 19.0 0.103 0.0 HOH
 3.678
 CE
 O
MET D:28 B:348 17.0 0.092 H -72.0 -35.7 17.0 0.092 0.0 HOH
 2.964
 N
 O
MET E:28 C:348 18.0 0.097 H -68.8 -41.0 17.0 0.092 0.005 A:O75475:0.005
 HOH
 3.058
 N
 O
MET F:28 D:348 16.0 0.086 H -64.8 -37.1 16.0 0.086 0.0 HOH
 2.870
 N
 O
MET G:28 E:348 24.0 0.13 H -76.7 -36.6 24.0 0.13 0.0 HOH
 3.055
 N
 O
MET H:28 F:348 16.0 0.086 H -68.6 -38.8 16.0 0.086 0.0 HOH
 3.046
 N
 O
6zv0 1 O75475 100.0 8e-57 NMR
 2021-12-01 MET A:9 A:348 45.0 0.243 H -69.1 -32.2 45.0 0.243 0.0
6trj 1 O75475 100.0 3e-56 X-RAY
 2020-09-09 MET A:9 A:9 26.0 0.141 H -66.5 -42.0 26.0 0.141 0.0 HOH
 3.046
 N
 O
2msr 2 O75475 100.0 1e-53 NMR
 2014-08-20 MET B:10 B:348 67.0 0.362 T -75.7 -21.6 67.0 0.362 0.0
2n3a 2 O75475 100.0 2e-50 NMR
 2015-08-19 MET B:1 B:348 92.0 0.497 360.0 -27.7 92.0 0.497 0.0
5n88 2 O75475 100.0 4e-50 X-RAY
 2017-12-20 MET B:2 D:348 61.0 0.33 H -70.6 -35.0 NA NA NA
5n88 3 O75475 98.73 3e-49 X-RAY
 2017-12-20 MET D:4 E:348 41.0 0.222 H -64.3 -46.3 41.0 0.222 0.0 HOH
 3.896
 CE
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o75475-f1 1 O75475 100.0 0.0 MET A:348 A:348 28.0 0.151 H -68.3 -41.7