Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 21187046 . C A CCDS6498.1:NM_021068.2:c.485tGt>tTt_NP_066546.1:p.162C>F Homo sapiens interferon alpha 4 (IFNA4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3ux9 1 P01562 81.07 1e-100 X-RAY
 2012-02-29 CYS A:142 A:139 24.0 0.178 H -59.2 -43.7 24.0 0.178 0.0
CYS C:142 C:139 25.0 0.185 H -59.5 -41.0 NA NA NA
2lms 1 P01563 82.53 1e-99 NMR
 2012-12-05 CYS A:139 A:138 30.0 0.222 T -89.9 -42.8 30.0 0.222 0.0
2lag 2 P01563 82.53 2e-99 NMR
 2011-08-17 CYS B:138 A:138 31.0 0.23 H -61.0 -36.5 31.0 0.23 0.0
4z5r 1 P01563 82.53 2e-99 X-RAY
 2015-07-08 CYS A:138 D:138 22.0 0.163 H -64.6 -48.7 22.0 0.163 0.0
CYS D:138 E:138 23.0 0.17 H -64.9 -49.8 NA NA NA
CYS G:138 F:138 23.0 0.17 H -65.6 -48.4 NA NA NA
CYS J:138 G:138 23.0 0.17 H -63.1 -49.3 NA NA NA
CYS M:138 H:138 24.0 0.178 H -65.2 -47.9 NA NA NA
CYS P:138 I:138 25.0 0.185 H -65.9 -49.1 NA NA NA
CYS S:138 X:138 25.0 0.185 H -64.7 -50.8 NA NA NA
CYS V:138 N:138 25.0 0.185 H -64.5 -50.0 NA NA NA
6jhd 1 P32881 83.13 5e-99 NMR
 2020-02-19 CYS A:139 A:139 3.0 0.022 H -77.2 -35.7 3.0 0.022 0.0
3se3 2 Q86UP4 81.33 9e-98 X-RAY
 2011-08-31 CYS B:139 B:138 21.0 0.156 H -67.5 -35.3 21.0 0.156 0.0
4ypg 3 P01563 83.23 1e-97 X-RAY
 2015-05-06 CYS C:140 C:138 27.0 0.2 H -61.2 -53.7 27.0 0.2 0.0
CYS D:140 D:138 30.0 0.222 H -62.3 -52.5 NA NA NA
3s9d 1 P01563 81.33 4e-97 X-RAY
 2011-08-31 CYS A:141 A:138 11.0 0.081 H -68.4 -37.1 11.0 0.081 0.0 HOH
 3.254
 N
 O
CYS C:141 C:138 16.0 0.119 H -65.9 -33.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p05014-f1 1 P05014 100.0 1e-141 CYS A:162 A:162 25.0 0.185 H -72.9 -31.9
af-p01571-f1 1 P01571 95.77 9e-135 CYS A:162 A:162 24.0 0.178 H -71.6 -33.3
af-p01566-f1 1 P01566 95.77 1e-134 CYS A:162 A:162 23.0 0.17 H -72.1 -32.0
af-p01567-f1 1 P01567 93.65 6e-130 CYS A:162 A:162 25.0 0.185 H -72.6 -32.4
af-p01568-f1 1 P01568 92.06 9e-129 CYS A:162 A:162 27.0 0.2 H -72.7 -35.2
af-p05015-f1 1 P05015 88.89 1e-125 CYS A:162 A:162 28.0 0.207 H -72.0 -34.5
af-p01569-f1 1 P01569 83.6 4e-120 CYS A:162 A:162 24.0 0.178 H -72.5 -33.2
af-p01570-f1 1 P01570 84.13 2e-119 CYS A:162 A:162 25.0 0.185 H -72.8 -34.0
af-p05013-f1 1 P05013 81.48 3e-112 CYS A:162 A:162 23.0 0.17 H -70.7 -34.1
af-p32881-f1 1 P32881 81.48 3e-111 CYS A:162 A:162 25.0 0.185 H -70.2 -35.8
af-p01563-f1 1 P01563 80.95 3e-106 CYS A:161 A:161 26.0 0.193 H -70.9 -34.2