Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8517977 . C A CCDS6472.2:NM_130391.3:c.1414Gct>Tct_NP_569075.2:p.472A>S Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 ALA A:452 A:479 65.0 0.565 S -127.2 82.5 65.0 0.565 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 ALA B:452 A:479 70.0 0.609 E -73.0 -169.9 70.0 0.609 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 ALA A:442 B:469 71.0 0.617 E -69.1 -174.4 71.0 0.617 0.0
ALA B:442 A:469 69.0 0.6 E -68.8 -173.5 69.0 0.6 0.0
4yfe 1 Q64487 98.43 9e-123 X-RAY
 2015-05-06 ALA A:153 A:479 69.0 0.6 E -71.6 179.5 69.0 0.6 0.0 HOH
 3.050
 N
 O
ALA B:153 B:479 69.0 0.6 E -72.6 178.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 ALA A:472 A:472 77.0 0.67 S -80.3 145.3