Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8517999 . G A CCDS6472.2:NM_130391.3:c.1392aaC>aaT_NP_569075.2:p.464N>N Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 ASN A:444 A:471 104.0 0.65 G -69.0 -16.1 104.0 0.65 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 ASN B:444 A:471 92.0 0.575 G -72.6 -9.9 92.0 0.575 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 ASN A:434 B:461 90.0 0.562 G -70.5 -12.6 90.0 0.562 0.0
ASN B:434 A:461 93.0 0.581 G -70.9 -12.4 93.0 0.581 0.0
4yfe 1 Q64487 98.43 9e-123 X-RAY
 2015-05-06 ASN A:145 A:471 89.0 0.556 G -65.0 -19.2 89.0 0.556 0.0 HOH
 3.536
 ND2
 O
ASN B:145 B:471 102.0 0.637 G -65.1 -19.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 ASN A:464 A:464 99.0 0.619 G -60.9 -27.6