Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8518075 . T A CCDS6472.2:NM_130391.3:c.1316aAg>aTg_NP_569075.2:p.439K>M Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 LYS A:419 A:446 147.0 0.735 E -118.4 155.7 147.0 0.735 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 LYS B:419 A:446 93.0 0.465 E -117.5 153.7 93.0 0.465 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 LYS A:409 B:436 89.0 0.445 E -118.4 153.7 89.0 0.445 0.0
LYS B:409 A:436 85.0 0.425 E -119.0 154.5 85.0 0.425 0.0
4yfe 1 Q64487 98.43 9e-123 X-RAY
 2015-05-06 LYS A:120 A:446 90.0 0.45 E -118.0 155.1 90.0 0.45 0.0 HOH
 2.766
 NZ
 O
LYS B:120 B:446 95.0 0.475 E -117.2 155.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 LYS A:439 A:439 114.0 0.57 E -127.2 163.1