Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8521412 . G A CCDS6472.2:NM_130391.3:c.826Ctg>Ttg_NP_569075.2:p.276L>L Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 LEU A:256 A:283 56.0 0.329 S -98.7 -30.0 56.0 0.329 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 LEU B:256 A:283 52.0 0.306 S -97.5 -33.8 52.0 0.306 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 LEU A:246 B:273 36.0 0.212 -76.5 128.1 36.0 0.212 0.0
LEU B:246 A:273 65.0 0.382 S -76.3 -56.6 65.0 0.382 0.0
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 LEU A:256 A:283 50.0 0.294 S -86.6 -51.7 50.0 0.294 0.0
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 LEU A:262 A:283 87.0 0.512 -100.0 -54.8 87.0 0.512 0.0
LEU C:262 C:283 96.0 0.565 S -97.3 -54.1 96.0 0.565 0.0
7ceg 1 Q64487 96.68 0.0 X-RAY
 2021-02-24 LEU A:246 A:273 70.0 0.412 S -76.2 -25.1 70.0 0.412 0.0
4rca 1 P23468 99.34 0.0 X-RAY
 2014-11-19 LEU A:256 A:276 63.0 0.371 -96.2 -44.2 63.0 0.371 0.0
5xwu 1 Q64487 100.0 0.0 X-RAY
 2018-06-06 LEU A:262 A:283 60.0 0.353 S -101.9 -18.3 60.0 0.353 0.0
LEU C:262 C:283 68.0 0.4 -105.0 -15.5 68.0 0.4 0.0
5wy8 1 P23468 100.0 0.0 X-RAY
 2017-11-22 LEU A:256 A:276 60.0 0.353 -98.2 -26.8 60.0 0.353 0.0 HOH
 6.731
 CG
 O
5y32 2 Q64487 100.0 0.0 X-RAY
 2017-08-16 LEU B:256 NA:NA DO NA DO DO DO NA NA NA
5xnp 2 P23468 97.0 0.0 X-RAY
 2018-01-24 LEU C:247 D:267 54.0 0.318 S -91.2 0.4 54.0 0.318 0.0 SO4
HOH
 9.569
8.064
 N
C
 O1
O
LEU D:247 E:267 55.0 0.324 S -91.2 -0.3 55.0 0.324 0.0 SO4
HOH
 9.681
7.886
 N
C
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 LEU A:276 A:276 59.0 0.347 S -86.0 -10.1