Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8521420 . G A CCDS6472.2:NM_130391.3:c.818gCa>gTa_NP_569075.2:p.273A>V Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 ALA A:253 A:280 92.0 0.8 S -103.5 -65.3 92.0 0.8 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 ALA B:253 A:280 90.0 0.783 T -108.9 -56.4 90.0 0.783 0.0 NAG
 9.112
 O
 O7
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 ALA A:243 B:270 95.0 0.826 S -118.2 -56.7 92.0 0.8 0.026 B:Q64487:0.026
ALA B:243 A:270 84.0 0.73 S -115.3 -48.8 84.0 0.73 0.0
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 ALA A:253 A:280 92.0 0.8 T -90.4 -39.5 92.0 0.8 0.0
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 ALA A:259 A:280 90.0 0.783 S -108.5 -40.0 90.0 0.783 0.0
ALA C:259 C:280 93.0 0.809 S -107.7 -38.6 90.0 0.783 0.026 D:Q96NI6:0.026
 NAG
 9.043
 N
 C8
7ceg 1 Q64487 96.68 0.0 X-RAY
 2021-02-24 ALA A:243 A:270 90.0 0.783 S -139.4 -48.1 90.0 0.783 0.0
4rca 1 P23468 99.34 0.0 X-RAY
 2014-11-19 ALA A:253 A:273 100.0 0.87 T -104.0 11.0 100.0 0.87 0.0
5xwu 1 Q64487 100.0 0.0 X-RAY
 2018-06-06 ALA A:259 A:280 91.0 0.791 T -109.2 -34.6 91.0 0.791 0.0
ALA C:259 C:280 78.0 0.678 T -108.5 -33.3 78.0 0.678 0.0
5wy8 1 P23468 100.0 0.0 X-RAY
 2017-11-22 ALA A:253 A:273 104.0 0.904 T -120.8 22.0 104.0 0.904 0.0 NAG
 9.817
 CB
 O7
5y32 2 Q64487 100.0 0.0 X-RAY
 2017-08-16 ALA B:253 NA:NA DO NA DO DO DO NA NA NA
5xnp 2 P23468 97.0 0.0 X-RAY
 2018-01-24 ALA C:244 D:264 94.0 0.817 T -94.0 4.4 85.0 0.739 0.078 A:Q96NI6:0.078
 SO4
 6.442
 O
 O1
ALA D:244 E:264 97.0 0.843 T -93.9 4.4 89.0 0.774 0.069 B:Q96NI6:0.07
 SO4
 6.247
 O
 O3

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 ALA A:273 A:273 104.0 0.904 T -119.8 2.2