Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8524946 . G A CCDS6472.2:NM_130391.3:c.658Cct>Tct_NP_569075.2:p.220P>S Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 PRO A:200 A:227 65.0 0.448 -65.9 138.4 65.0 0.448 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 PRO B:200 A:227 72.0 0.497 -75.2 157.6 72.0 0.497 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 PRO A:194 B:221 72.0 0.497 -70.6 133.5 28.0 0.193 0.304 B:Q64487:0.303
PRO B:194 A:221 67.0 0.462 -69.3 135.3 39.0 0.269 0.193 A:Q64487:0.193
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 PRO A:200 A:227 81.0 0.559 -75.9 157.7 81.0 0.559 0.0
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 PRO A:206 A:227 66.0 0.455 -58.6 158.6 66.0 0.455 0.0
PRO C:206 C:227 66.0 0.455 -58.8 158.1 66.0 0.455 0.0
7ceg 1 Q64487 96.68 0.0 X-RAY
 2021-02-24 PRO A:194 A:221 52.0 0.359 -69.5 165.4 16.0 0.11 0.249 B:Q8BYM5:0.248
4rca 1 P23468 99.34 0.0 X-RAY
 2014-11-19 PRO A:200 A:220 71.0 0.49 -66.8 144.2 71.0 0.49 0.0
5xwu 1 Q64487 100.0 0.0 X-RAY
 2018-06-06 PRO A:206 A:227 76.0 0.524 -72.7 151.8 54.0 0.372 0.152 B:Q2WF71:0.152
 MES
 9.889
 CG
 C2
PRO C:206 C:227 73.0 0.503 -74.2 150.1 52.0 0.359 0.144 D:Q2WF71:0.145
 MES
 9.577
 CG
 C3
5wy8 1 P23468 100.0 0.0 X-RAY
 2017-11-22 PRO A:200 A:220 68.0 0.469 -66.6 155.9 68.0 0.469 0.0
5y32 2 Q64487 100.0 0.0 X-RAY
 2017-08-16 PRO B:200 A:227 74.0 0.51 -70.5 149.1 74.0 0.51 0.0 HOH
 4.315
 CD
 O
5xnp 2 P23468 97.0 0.0 X-RAY
 2018-01-24 PRO C:191 D:211 67.0 0.462 -69.0 148.1 64.0 0.441 0.021 A:Q96NI6:0.021
 HOH
 9.940
 O
 O
PRO D:191 E:211 69.0 0.476 -68.6 148.4 66.0 0.455 0.021 B:Q96NI6:0.021
2yd6 1 Q3KPJ2 96.62 2e-131 X-RAY
 2011-04-13 PRO A:197 A:214 65.0 0.448 -76.3 157.7 64.0 0.441 0.007 A:Q3KPJ2:0.007
 HOH
 2.781
 O
 O
2yd7 1 Q3KPJ2 96.62 2e-131 X-RAY
 2011-04-13 PRO A:197 A:214 65.0 0.448 -74.7 155.1 65.0 0.448 0.0 HOH
 3.757
 CD
 O
PRO B:197 B:214 69.0 0.476 -75.3 159.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 PRO A:220 A:220 60.0 0.414 -76.2 145.3