Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8636815 . C A CCDS6472.2:NM_130391.3:c.94Gat>Tat_NP_569075.2:p.32D>Y Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 ASP A:12 A:39 78.0 0.52 -47.2 151.6 78.0 0.52 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 ASP B:12 A:39 96.0 0.64 -51.6 142.1 96.0 0.64 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 ASP A:12 B:39 107.0 0.713 -51.6 151.7 107.0 0.713 0.0
ASP B:12 A:39 105.0 0.7 -51.1 152.8 105.0 0.7 0.0
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 ASP A:12 A:39 110.0 0.733 -51.2 142.3 110.0 0.733 0.0
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 ASP A:18 A:39 104.0 0.693 -73.1 109.3 104.0 0.693 0.0
ASP C:18 C:39 95.0 0.633 -70.4 111.5 95.0 0.633 0.0
7ceg 1 Q64487 96.68 0.0 X-RAY
 2021-02-24 ASP A:12 A:39 108.0 0.72 -69.3 130.3 108.0 0.72 0.0
4rca 1 P23468 99.34 0.0 X-RAY
 2014-11-19 ASP A:12 A:32 112.0 0.747 -57.5 137.6 112.0 0.747 0.0
5xwu 1 Q64487 100.0 0.0 X-RAY
 2018-06-06 ASP A:18 A:39 118.0 0.787 -70.1 121.3 118.0 0.787 0.0
ASP C:18 C:39 112.0 0.747 -71.8 123.1 112.0 0.747 0.0
5wy8 1 P23468 100.0 0.0 X-RAY
 2017-11-22 ASP A:12 A:32 98.0 0.653 -55.0 149.2 98.0 0.653 0.0
5y32 2 Q64487 100.0 0.0 X-RAY
 2017-08-16 ASP B:12 A:39 107.0 0.713 -47.2 143.4 107.0 0.713 0.0 HOH
 3.746
 O
 O
5xnp 2 P23468 97.0 0.0 X-RAY
 2018-01-24 ASP C:12 D:32 110.0 0.733 -62.2 135.8 110.0 0.733 0.0 HOH
 3.031
 OD1
 O
ASP D:12 E:32 113.0 0.753 -62.6 137.4 113.0 0.753 0.0 HOH
 3.158
 OD1
 O
2yd6 1 Q3KPJ2 96.62 2e-131 X-RAY
 2011-04-13 ASP A:15 A:32 106.0 0.707 -50.6 142.9 106.0 0.707 0.0 CL
HOH
 5.982
2.618
 N
OD1
 CL
O
2yd7 1 Q3KPJ2 96.62 2e-131 X-RAY
 2011-04-13 ASP A:15 A:32 90.0 0.6 -46.2 138.9 90.0 0.6 0.0 PO4
HOH
 6.461
2.698
 OD2
OD1
 O2
O
ASP B:15 B:32 104.0 0.693 -55.5 140.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 ASP A:32 A:32 95.0 0.633 -60.2 139.3