Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8636818 . C A CCDS6472.2:NM_130391.3:c.91Gtt>Ttt_NP_569075.2:p.31V>F Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 VAL A:11 A:38 114.0 0.735 -108.3 150.7 114.0 0.735 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 VAL B:11 A:38 107.0 0.69 -116.7 149.9 107.0 0.69 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 VAL A:11 B:38 111.0 0.716 -108.0 152.8 111.0 0.716 0.0
VAL B:11 A:38 109.0 0.703 -108.7 153.0 109.0 0.703 0.0
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 VAL A:11 A:38 106.0 0.684 -117.4 150.5 106.0 0.684 0.0
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 VAL A:17 A:38 96.0 0.619 -115.1 158.5 96.0 0.619 0.0
VAL C:17 C:38 106.0 0.684 -113.8 160.8 106.0 0.684 0.0
7ceg 1 Q64487 96.68 0.0 X-RAY
 2021-02-24 VAL A:11 A:38 99.0 0.639 -106.4 146.9 99.0 0.639 0.0
4rca 1 P23468 99.34 0.0 X-RAY
 2014-11-19 VAL A:11 A:31 108.0 0.697 -114.1 156.6 108.0 0.697 0.0
5xwu 1 Q64487 100.0 0.0 X-RAY
 2018-06-06 VAL A:17 A:38 105.0 0.677 -119.9 173.5 105.0 0.677 0.0
VAL C:17 C:38 100.0 0.645 -120.2 172.5 100.0 0.645 0.0
5wy8 1 P23468 100.0 0.0 X-RAY
 2017-11-22 VAL A:11 A:31 104.0 0.671 -123.7 141.9 104.0 0.671 0.0
5y32 2 Q64487 100.0 0.0 X-RAY
 2017-08-16 VAL B:11 A:38 109.0 0.703 -117.9 149.3 109.0 0.703 0.0 HOH
 3.025
 N
 O
5xnp 2 P23468 97.0 0.0 X-RAY
 2018-01-24 VAL C:11 D:31 103.0 0.665 -137.4 159.2 103.0 0.665 0.0 HOH
 6.574
 C
 O
VAL D:11 E:31 106.0 0.684 -137.6 160.0 106.0 0.684 0.0 HOH
 6.606
 C
 O
2yd6 1 Q3KPJ2 96.62 2e-131 X-RAY
 2011-04-13 VAL A:14 A:31 108.0 0.697 -117.1 150.8 108.0 0.697 0.0 CL
HOH
 3.265
2.620
 N
O
 CL
O
2yd7 1 Q3KPJ2 96.62 2e-131 X-RAY
 2011-04-13 VAL A:14 A:31 100.0 0.645 -115.8 137.4 100.0 0.645 0.0 PO4
HOH
 9.677
2.670
 O
O
 O3
O
VAL B:14 B:31 109.0 0.703 -112.0 154.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 VAL A:31 A:31 98.0 0.632 -123.2 146.9