Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100405634 . G A CCDS6728.1:NM_002486.4:c.373Gtg>Atg_NP_002477.1:p.125V>M Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 VAL A:125 A:125 4.0 0.026 H -42.8 -42.1 4.0 0.026 0.0 GOL
HOH
 4.844
3.334
 CG1
CG2
 O3
O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 VAL A:125 A:125 4.0 0.026 H -64.0 -23.4 4.0 0.026 0.0 HOH
 3.995
 CG1
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 VAL A:125 A:125 6.0 0.039 H -56.9 -44.0 6.0 0.039 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 VAL A:125 A:125 4.0 0.026 H -58.8 -34.1 4.0 0.026 0.0 HOH
 3.454
 CG2
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 VAL A:125 A5:125 43.0 NA H -42.9 -42.1 43.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 VAL A:107 A:125 3.0 0.019 H -59.0 -42.3 3.0 0.019 0.0
VAL C:107 C:125 3.0 0.019 H -59.2 -42.0 NA NA NA
VAL F:107 F:125 3.0 0.019 H -58.9 -42.5 NA NA NA
VAL H:107 I:125 3.0 0.019 H -59.2 -42.0 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 VAL A:106 C:125 5.0 0.032 H -57.4 -39.7 5.0 0.032 0.0 HOH
 3.571
 CG2
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 VAL A:107 A:125 3.0 0.019 H -54.1 -46.7 3.0 0.019 0.0
VAL C:107 D:125 3.0 0.019 H -53.8 -46.8 NA NA NA
VAL E:107 G:125 3.0 0.019 H -53.8 -46.9 NA NA NA
VAL G:107 J:125 3.0 0.019 H -53.8 -47.0 NA NA NA
VAL I:107 M:125 3.0 0.019 H -53.8 -46.8 NA NA NA
VAL K:107 P:125 3.0 0.019 H -53.6 -47.0 NA NA NA
VAL M:107 S:125 3.0 0.019 H -53.7 -46.9 NA NA NA
VAL O:107 V:125 2.0 0.013 H -54.2 -46.7 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 VAL A:103 C:125 4.0 0.026 H -60.4 -35.9 4.0 0.026 0.0 HOH
 2.938
 HG11
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 VAL A:106 A:125 5.0 0.032 H -56.6 -44.7 5.0 0.032 0.0 HOH
 3.307
 CG2
 O
VAL B:106 B:125 5.0 0.032 H -60.7 -42.0 NA NA NA
VAL C:106 C:125 6.0 0.039 H -56.5 -43.3 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 VAL A:106 C:125 4.0 0.026 H -61.3 -42.9 4.0 0.026 0.0 HOH
 3.405
 CG2
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 VAL A:106 A:125 4.0 0.026 H -56.0 -38.6 4.0 0.026 0.0 HOH
 3.424
 CG2
 O
VAL B:106 B:125 5.0 0.032 H -56.5 -45.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 VAL A:125 A:125 4.0 0.026 H -59.7 -43.8