Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100410431 . C A CCDS6728.1:NM_002486.4:c.823Cct>Act_NP_002477.1:p.275P>T Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 PRO A:275 A:275 106.0 0.731 -58.8 132.3 106.0 0.731 0.0 HOH
 3.843
 O
 O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 PRO A:275 A:275 102.0 0.703 -55.2 144.6 102.0 0.703 0.0 HOH
 5.005
 CA
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 PRO A:275 A:275 103.0 0.71 -45.8 153.8 103.0 0.71 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 PRO A:275 A:275 95.0 0.655 -61.3 143.1 95.0 0.655 0.0 HOH
 4.296
 CD
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 PRO A:275 A5:275 123.0 0.848 -58.8 132.3 123.0 0.848 0.0
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 PRO A:257 A:275 96.0 0.662 -77.1 155.9 96.0 0.662 0.0
PRO C:257 C:275 97.0 0.669 -76.6 155.5 NA NA NA
PRO F:257 F:275 99.0 0.683 -76.8 155.2 NA NA NA
PRO H:257 I:275 98.0 0.676 -77.0 155.5 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 PRO A:256 C:275 94.0 0.648 -51.8 154.2 94.0 0.648 0.0 HOH
 2.541
 O
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 PRO A:257 A:275 100.0 0.69 -75.8 161.9 100.0 0.69 0.0
PRO C:257 D:275 99.0 0.683 -75.8 161.9 NA NA NA
PRO E:257 G:275 100.0 0.69 -75.8 161.8 NA NA NA
PRO G:257 J:275 103.0 0.71 -75.9 161.8 NA NA NA
PRO I:257 M:275 99.0 0.683 -75.7 161.9 NA NA NA
PRO K:257 P:275 100.0 0.69 -75.6 161.8 NA NA NA
PRO M:257 S:275 102.0 0.703 -75.9 161.8 NA NA NA
PRO O:257 V:275 100.0 0.69 -75.8 162.0 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 PRO A:253 C:275 104.0 0.717 -64.9 159.4 104.0 0.717 0.0 HOH
 2.634
 HD3
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 PRO A:256 A:275 101.0 0.697 -59.6 149.8 101.0 0.697 0.0 HOH
 2.769
 O
 O
PRO B:256 B:275 99.0 0.683 -61.5 153.4 NA NA NA
PRO C:256 C:275 102.0 0.703 -59.3 150.6 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 PRO A:256 C:275 99.0 0.683 -54.5 152.9 99.0 0.683 0.0 HOH
 2.860
 O
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 PRO A:256 A:275 98.0 0.676 -54.2 154.7 98.0 0.676 0.0 HOH
 2.640
 O
 O
PRO B:256 B:275 101.0 0.697 -56.1 145.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 PRO A:275 A:275 104.0 0.717 -55.3 154.1