Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100417210 . A C CCDS6728.1:NM_002486.4:c.1219Act>Cct_NP_002477.1:p.407T>P Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 THR A:407 A:407 12.0 0.086 H -44.4 -47.2 12.0 0.086 0.0 HOH
 3.024
 OG1
 O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 THR A:407 A:407 6.0 0.043 H -40.0 -52.2 6.0 0.043 0.0 HOH
 7.858
 O
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 THR A:407 A:407 6.0 0.043 H -43.6 -37.9 6.0 0.043 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 THR A:407 A:407 6.0 0.043 H -46.9 -43.2 6.0 0.043 0.0 HOH
 3.527
 O
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 THR A:407 A5:407 44.0 NA H -44.4 -47.1 44.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 THR A:389 A:407 13.0 0.093 H -56.1 -41.3 13.0 0.093 0.0
THR C:389 C:407 11.0 0.079 H -55.8 -41.7 NA NA NA
THR F:389 F:407 12.0 0.086 H -55.2 -41.9 NA NA NA
THR H:389 I:407 12.0 0.086 H -56.2 -41.2 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 THR A:388 C:407 4.0 0.029 H -47.5 -38.1 4.0 0.029 0.0 HOH
 3.762
 O
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 THR A:389 A:407 13.0 0.093 H -62.0 -37.2 13.0 0.093 0.0
THR C:389 D:407 13.0 0.093 H -61.9 -37.2 NA NA NA
THR E:389 G:407 15.0 0.107 H -62.1 -36.8 NA NA NA
THR G:389 J:407 14.0 0.1 H -62.0 -36.9 NA NA NA
THR I:389 M:407 13.0 0.093 H -62.0 -37.2 NA NA NA
THR K:389 P:407 15.0 0.107 H -62.1 -36.7 NA NA NA
THR M:389 S:407 14.0 0.1 H -61.9 -37.0 NA NA NA
THR O:389 V:407 13.0 0.093 H -61.9 -37.2 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 THR A:385 C:407 11.0 0.079 H -62.7 -33.5 11.0 0.079 0.0 HOH
 4.030
 H
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 THR A:388 A:407 14.0 0.1 H -50.7 -41.9 14.0 0.1 0.0 HOH
 3.059
 OG1
 O
THR B:388 B:407 13.0 0.093 H -44.6 -44.5 NA NA NA
THR C:388 C:407 13.0 0.093 H -46.2 -40.5 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 THR A:388 C:407 10.0 0.071 H -48.9 -37.6 10.0 0.071 0.0 HOH
 3.126
 OG1
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 THR A:388 A:407 13.0 0.093 H -51.7 -40.9 13.0 0.093 0.0 HOH
 3.318
 OG1
 O
THR B:388 B:407 14.0 0.1 H -47.6 -42.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 THR A:407 A:407 14.0 0.1 H -52.2 -36.7