Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100429079 . C A CCDS6728.1:NM_002486.4:c.1936Cgt>Agt_NP_002477.1:p.646R>S Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ARG A:646 A:646 104.0 0.462 H -64.4 -43.6 82.0 0.364 0.098 B:P52298:0.098
 GOL
GOL
GOL
GOL
HOH
 7.083
3.153
6.934
5.811
3.861
 NH2
NH2
O
NH2
CG
 O1
O3
C3
O3
O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 ARG A:646 A:646 121.0 0.538 H -55.5 -51.5 92.0 0.409 0.129 B:P52298:0.129
 GOL
GOL
HOH
 7.083
3.788
2.629
 NH2
NH2
NH1
 O1
O3
O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ARG A:646 A:646 117.0 0.52 H -55.4 -44.5 90.0 0.4 0.12 B:P52298:0.12
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 ARG A:646 A:646 117.0 0.52 H -58.6 -38.3 91.0 0.404 0.116 B:P52298:0.116
 HOH
 2.545
 NH1
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 ARG A:646 A5:646 58.0 NA H -64.4 -43.5 58.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 ARG A:628 A:646 105.0 0.467 H -61.5 -39.6 78.0 0.347 0.12 B:P52298:0.12
ARG C:628 C:646 104.0 0.462 H -61.0 -39.6 NA NA NA
ARG F:628 F:646 103.0 0.458 H -61.1 -39.6 NA NA NA
ARG H:628 I:646 102.0 0.453 H -61.7 -39.3 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 ARG A:627 C:646 101.0 0.449 H -61.3 -39.3 78.0 0.347 0.102 B:P52298:0.102
 HOH
 3.505
 NE
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 ARG A:628 A:646 116.0 0.516 H -62.3 -44.3 90.0 0.4 0.116 B:P52298:0.116
ARG C:628 D:646 114.0 0.507 H -62.4 -44.5 NA NA NA
ARG E:628 G:646 116.0 0.516 H -62.1 -44.4 NA NA NA
ARG G:628 J:646 118.0 0.524 H -62.4 -44.5 NA NA NA
ARG I:628 M:646 118.0 0.524 H -62.5 -44.5 NA NA NA
ARG K:628 P:646 116.0 0.516 H -62.2 -44.5 NA NA NA
ARG M:628 S:646 120.0 0.533 H -62.4 -44.4 NA NA NA
ARG O:628 V:646 114.0 0.507 H -62.1 -44.4 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 ARG A:624 C:646 143.0 0.636 H -58.8 -33.8 130.0 0.578 0.058 B:P52298:0.058
 HOH
 1.937
 HH12
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 ARG A:627 A:646 107.0 0.476 H -58.2 -41.4 79.0 0.351 0.125 D:P52298:0.124
 HOH
 2.800
 NH1
 O
ARG B:627 B:646 105.0 0.467 H -57.2 -45.0 NA NA NA
ARG C:627 C:646 105.0 0.467 H -55.9 -46.3 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ARG A:627 C:646 121.0 0.538 H -59.9 -44.9 96.0 0.427 0.111 B:P52298:0.111
 HOH
 2.821
 NH2
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 ARG A:627 A:646 106.0 0.471 H -64.3 -37.2 84.0 0.373 0.098 C:P52298:0.098
 HOH
 2.313
 NE
 O
ARG B:627 B:646 105.0 0.467 H -60.9 -40.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 ARG A:646 A:646 101.0 0.449 H -60.4 -34.8