Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 137300857 . A C CCDS35172.1:NM_002957.4:c.502Acc>Ccc_NP_002948.1:p.168T>P Homo sapiens retinoid X receptor, alpha (RXRA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3dzu 1 P19793 100.0 0.0 X-RAY
 2008-10-28 THR A:173 A:168 128.0 0.914 -141.7 108.9 119.0 0.85 0.064 B:P37231:0.064
3dzy 1 P19793 100.0 0.0 X-RAY
 2008-10-28 THR A:173 A:168 126.0 0.9 -123.8 116.0 126.0 0.9 0.0
3e00 1 P19793 100.0 0.0 X-RAY
 2008-10-28 THR A:173 A:168 128.0 0.914 -122.7 97.8 123.0 0.879 0.035 B:P37231:0.036
 DC
 9.792
 N
 O5'
4nqa 1 P19793 100.0 0.0 X-RAY
 2014-02-26 THR A:71 A:168 128.0 0.914 -80.7 119.2 128.0 0.914 0.0 DG
 8.706
 O
 OP1
THR G:71 H:168 84.0 0.6 -132.9 117.4 NA NA NA
5uan 1 P19793 100.0 0.0 X-RAY
 2017-10-18 THR A:71 NA:NA DO NA DO DO DO NA NA NA
1ynw 4 P19793 100.0 3e-73 X-RAY
 2005-02-15 THR D:39 B:268 124.0 0.886 -135.7 120.6 124.0 0.886 0.0 DT
 8.457
 N
 OP2
1dsz 4 P19793 98.82 2e-62 X-RAY
 2000-07-10 THR D:41 B:1268 122.0 0.871 -115.3 131.3 122.0 0.871 0.0 DC
HOH
 9.882
3.011
 O
N
 O5'
O
4cn2 3 P19793 100.0 1e-61 X-RAY
 2015-02-18 THR C:43 C:168 132.0 0.943 -114.8 139.4 132.0 0.943 0.0 DT
MES
HOH
 8.506
3.464
2.546
 O
CA
OG1
 OP1
O2S
O
THR D:43 D:168 131.0 0.936 -112.9 130.9 131.0 0.936 0.0 DT
CL
CL
HOH
 9.281
9.019
4.597
2.828
 N
O
O
N
 OP1
CL
CL
O
4cn3 1 P19793 100.0 1e-61 X-RAY
 2015-02-18 THR A:43 A:168 128.0 0.914 -120.8 120.4 NA NA NA
THR B:43 B:168 130.0 0.929 -119.5 128.7 130.0 0.929 0.0 DT
HOH
 9.178
3.637
 O
CA
 OP1
O
THR C:43 C:168 126.0 0.9 -125.8 139.7 126.0 0.9 0.0 DG
HOH
 8.935
3.168
 O
CA
 OP1
O
4cn5 1 P19793 100.0 1e-61 X-RAY
 2015-02-18 THR A:43 A:168 126.0 0.9 -110.7 133.2 126.0 0.9 0.0 DC
CL
CL
HOH
 8.791
4.034
7.385
2.470
 O
C
O
OG1
 OP1
CL
CL
O
THR B:43 B:168 133.0 0.95 -136.9 127.4 133.0 0.95 0.0 DT
HOH
 8.571
4.640
 O
O
 OP1
O
4cn7 1 P19793 100.0 1e-61 X-RAY
 2015-02-18 THR A:43 A:168 145.0 1.0 -93.9 102.8 NA NA NA
THR B:43 B:168 129.0 0.921 -110.6 129.6 NA NA NA
THR E:43 E:168 129.0 0.921 -114.9 131.5 129.0 0.921 0.0 DT
HOH
 8.396
3.452
 O
O
 OP1
O
THR F:43 F:168 128.0 0.914 -111.2 130.5 128.0 0.914 0.0 HOH
 3.037
 N
 O
6fbq 1 P19793 100.0 1e-61 X-RAY
 2018-12-05 THR A:43 A:168 133.0 0.95 -123.2 135.8 133.0 0.95 0.0 DT
HOH
 8.501
1.922
 O
HG1
 OP1
O
THR B:43 B:168 134.0 0.957 -124.4 136.7 134.0 0.957 0.0 HOH
 2.960
 O
 O
6fbr 1 P19793 100.0 1e-61 X-RAY
 2018-12-05 THR A:43 A:168 126.0 0.9 -113.0 128.1 126.0 0.9 0.0 DT
HOH
 9.036
3.472
 O
CA
 OP1
O
THR B:43 B:168 126.0 0.9 -101.0 132.2 126.0 0.9 0.0 DG
DA
DT
HOH
 9.306
7.366
9.412
5.375
 O
O
O
N
 O3'
OP1
OP1
O
6xwg 3 P19793 100.0 1e-61 X-RAY
 2020-09-09 THR C:43 C:168 137.0 0.979 -120.2 131.7 137.0 0.979 0.0 HOH
 3.543
 O
 O
6xwh 3 P19793 100.0 1e-61 X-RAY
 2020-09-09 THR C:43 C:168 137.0 0.979 -119.9 122.6 137.0 0.979 0.0 DT
HOH
 9.287
7.263
 O
O
 OP1
O
THR D:43 D:168 135.0 0.964 -132.1 138.7 135.0 0.964 0.0 DT
HOH
 9.651
6.884
 O
C
 OP1
O
4cn3 2 P19793 98.8 8e-61 X-RAY
 2015-02-18 THR D:43 D:168 126.0 0.9 -126.6 107.9 NA NA NA
1rxr 1 P19793 98.8 3e-60 NMR
 1998-11-11 THR A:39 A:168 115.0 0.821 -140.2 154.3 115.0 0.821 0.0
1by4 3 P19793 98.78 9e-60 X-RAY
 2000-01-12 THR E:41 A:1168 133.0 0.95 -152.7 59.1 133.0 0.95 0.0 DT
HOH
 9.095
4.396
 N
CA
 OP1
O
THR F:41 B:1268 123.0 0.879 -118.8 130.1 123.0 0.879 0.0 DC
HOH
 9.716
4.413
 N
N
 O5'
O
THR G:41 C:2168 116.0 0.829 -126.4 178.1 NA NA NA
THR H:41 D:2268 131.0 0.936 -109.7 135.9 NA NA NA
1r0n 3 P19793 100.0 1e-56 X-RAY
 2003-10-21 THR C:39 A:134 127.0 0.907 -124.8 127.1 127.0 0.907 0.0 DT
HOH
 9.092
3.847
 O
CA
 OP1
O
1r0o 3 P20153 85.37 2e-51 X-RAY
 2003-10-21 THR C:44 A:40 133.0 0.95 -117.8 127.6 133.0 0.95 0.0 DT
HOH
 8.867
3.995
 O
CG2
 OP1
O
2han 3 P20153 81.61 3e-51 X-RAY
 2007-05-22 THR C:46 A:40 131.0 0.936 -123.1 134.3 131.0 0.936 0.0 DT
HOH
 8.927
3.648
 O
CA
 OP1
O
4umm 1 ? 87.18 5e-51 EM
 2014-06-25 THR A:37 A:146 132.0 0.943 -123.1 136.7 132.0 0.943 0.0 DT
 8.991
 O
 OP1
2nll 3 P19793 100.0 5e-48 X-RAY
 1997-03-12 THR C:34 A:168 109.0 0.779 -144.5 109.0 109.0 0.779 0.0 HOH
 3.142
 CG2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19793-f1 1 P19793 100.0 0.0 THR A:168 A:168 130.0 0.929 -94.5 128.4