Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 137300863 . A C CCDS35172.1:NM_002957.4:c.508Acc>Ccc_NP_002948.1:p.170T>P Homo sapiens retinoid X receptor, alpha (RXRA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3dzu 1 P19793 100.0 0.0 X-RAY
 2008-10-28 THR A:175 A:170 120.0 0.857 -143.0 150.6 120.0 0.857 0.0 ZN
 5.649
 O
 ZN
3dzy 1 P19793 100.0 0.0 X-RAY
 2008-10-28 THR A:175 A:170 121.0 0.864 -128.5 144.0 121.0 0.864 0.0 ZN
 5.771
 O
 ZN
3e00 1 P19793 100.0 0.0 X-RAY
 2008-10-28 THR A:175 A:170 115.0 0.821 -141.7 134.5 115.0 0.821 0.0 ZN
 5.839
 O
 ZN
4nqa 1 P19793 100.0 0.0 X-RAY
 2014-02-26 THR A:73 A:170 136.0 0.971 -127.9 114.0 136.0 0.971 0.0 DG
ZN
 9.945
6.884
 N
C
 OP1
ZN
THR G:73 H:170 137.0 0.979 -129.6 114.5 NA NA NA
5uan 1 P19793 100.0 0.0 X-RAY
 2017-10-18 THR A:73 NA:NA DO NA DO DO DO NA NA NA
1ynw 4 P19793 100.0 3e-73 X-RAY
 2005-02-15 THR D:41 B:270 132.0 0.943 -124.2 133.2 132.0 0.943 0.0 ZN
 5.557
 O
 ZN
1dsz 4 P19793 98.82 2e-62 X-RAY
 2000-07-10 THR D:43 B:1270 126.0 0.9 -128.9 139.3 126.0 0.9 0.0 ZN
HOH
 6.116
2.626
 C
O
 ZN
O
4cn2 3 P19793 100.0 1e-61 X-RAY
 2015-02-18 THR C:45 C:170 84.0 0.6 -136.3 134.6 79.0 0.564 0.036 D:P19793:0.036
 ZN
MES
HOH
 5.962
5.099
2.630
 O
N
O
 ZN
O2S
O
THR D:45 D:170 120.0 0.857 -123.4 132.6 120.0 0.857 0.0 ZN
CL
CL
HOH
 6.181
5.414
2.998
2.672
 O
O
N
O
 ZN
CL
CL
O
4cn3 1 P19793 100.0 1e-61 X-RAY
 2015-02-18 THR A:45 A:170 126.0 0.9 -130.1 126.9 NA NA NA
THR B:45 B:170 128.0 0.914 -130.7 129.2 128.0 0.914 0.0 ZN
HOH
 6.066
2.757
 O
O
 ZN
O
THR C:45 C:170 136.0 0.971 -129.5 128.9 136.0 0.971 0.0 ZN
HOH
 6.072
2.880
 C
O
 ZN
O
4cn5 1 P19793 100.0 1e-61 X-RAY
 2015-02-18 THR A:45 A:170 123.0 0.879 -135.6 137.8 123.0 0.879 0.0 ZN
CL
CL
CL
HOH
 5.994
5.192
4.493
9.420
2.439
 O
N
O
N
O
 ZN
CL
CL
CL
O
THR B:45 B:170 133.0 0.95 -131.1 129.5 133.0 0.95 0.0 ZN
HOH
 6.372
2.451
 C
O
 ZN
O
4cn7 1 P19793 100.0 1e-61 X-RAY
 2015-02-18 THR A:45 A:170 120.0 0.857 -149.0 142.7 NA NA NA
THR B:45 B:170 124.0 0.886 -132.4 137.1 NA NA NA
THR E:45 E:170 127.0 0.907 -132.5 134.4 127.0 0.907 0.0 ZN
HOH
 5.843
2.640
 O
O
 ZN
O
THR F:45 F:170 115.0 0.821 -130.1 135.0 115.0 0.821 0.0 ZN
HOH
 5.849
2.547
 O
O
 ZN
O
6fbq 1 P19793 100.0 1e-61 X-RAY
 2018-12-05 THR A:45 A:170 108.0 0.771 -140.7 143.3 97.0 0.693 0.078 B:P19793:0.079
 DT
ZN
HOH
 9.821
6.060
2.003
 HG22
O
H
 OP1
ZN
O
THR B:45 B:170 98.0 0.7 -134.1 132.6 98.0 0.7 0.0 ZN
HOH
 6.178
2.044
 O
H
 ZN
O
6fbr 1 P19793 100.0 1e-61 X-RAY
 2018-12-05 THR A:45 A:170 127.0 0.907 -87.3 -48.8 127.0 0.907 0.0 HOH
 5.846
 N
 O
THR B:45 B:170 139.0 0.993 T -56.6 -57.6 139.0 0.993 0.0 HOH
 6.587
 N
 O
6xwg 3 P19793 100.0 1e-61 X-RAY
 2020-09-09 THR C:45 C:170 128.0 0.914 -126.0 127.8 128.0 0.914 0.0 DA
ZN
HOH
 9.064
5.969
3.027
 O
O
N
 OP1
ZN
O
6xwh 3 P19793 100.0 1e-61 X-RAY
 2020-09-09 THR C:45 C:170 131.0 0.936 -137.5 126.9 131.0 0.936 0.0 ZN
HOH
 5.985
3.363
 O
O
 ZN
O
THR D:45 D:170 131.0 0.936 -120.5 134.7 131.0 0.936 0.0 ZN
HOH
 6.104
2.706
 O
O
 ZN
O
4cn3 2 P19793 98.8 8e-61 X-RAY
 2015-02-18 THR D:45 D:170 120.0 0.857 -134.9 126.5 NA NA NA
1rxr 1 P19793 98.8 3e-60 NMR
 1998-11-11 THR A:41 A:170 110.0 0.786 -150.8 161.2 110.0 0.786 0.0 ZN
 6.490
 C
 ZN
1by4 3 P19793 98.78 9e-60 X-RAY
 2000-01-12 THR E:43 A:1170 129.0 0.921 -121.1 121.2 129.0 0.921 0.0 ZN
HOH
 6.445
6.149
 C
N
 ZN
O
THR F:43 B:1270 92.0 0.657 -144.5 134.6 92.0 0.657 0.0 ZN
HOH
 5.801
8.414
 O
C
 ZN
O
THR G:43 C:2170 120.0 0.857 -130.8 105.9 NA NA NA
THR H:43 D:2270 101.0 0.721 -148.3 135.4 NA NA NA
1r0n 3 P19793 100.0 1e-56 X-RAY
 2003-10-21 THR C:41 A:136 127.0 0.907 -119.3 -60.3 127.0 0.907 0.0 ZN
HOH
 5.869
3.904
 O
N
 ZN
O
1r0o 3 P20153 85.37 2e-51 X-RAY
 2003-10-21 ALA C:46 A:42 82.0 0.713 -139.6 129.8 82.0 0.713 0.0 DC
ZN
HOH
 9.735
6.065
4.001
 O
C
O
 OP1
ZN
O
2han 3 P20153 81.61 3e-51 X-RAY
 2007-05-22 ALA C:48 A:42 84.0 0.73 -126.2 131.0 84.0 0.73 0.0 DA
ZN
HOH
 9.774
6.163
2.801
 O
C
N
 OP1
ZN
O
4umm 1 ? 87.18 5e-51 EM
 2014-06-25 ALA A:39 A:148 86.0 0.748 -124.3 125.5 86.0 0.748 0.0 DA
 9.742
 O
 OP1
2nll 3 P19793 100.0 5e-48 X-RAY
 1997-03-12 THR C:36 A:170 109.0 0.779 -146.5 124.1 109.0 0.779 0.0 ZN
HOH
 6.029
2.757
 C
O
 ZN
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19793-f1 1 P19793 100.0 0.0 THR A:170 A:170 124.0 0.886 -119.3 131.6