Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 140707927 . C A CCDS7050.2:NM_024757.4:c.3125tCt>tAt_NP_079033.4:p.1042S>Y Homo sapiens euchromatic histone lysine methyltransferase 1 (EHMT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2igq 1 Q9H9B1 100.0 0.0 X-RAY
 2006-10-24 SER A:61 A:1011 26.0 0.226 S -80.0 -15.9 25.0 0.217 0.009 B:Q9H9B1:0.009
 HOH
 2.631
 O
 O
SER B:61 B:1011 23.0 0.2 S -87.7 -12.8 23.0 0.2 0.0 HOH
 2.665
 OG
 O
2rfi 1 Q9H9B1 100.0 0.0 X-RAY
 2007-10-23 SER A:61 A:1011 30.0 0.261 S -90.9 -12.7 30.0 0.261 0.0 HOH
 2.664
 O
 O
SER B:61 B:1011 26.0 0.226 S -89.3 -14.2 NA NA NA
3mo0 1 Q9H9B1 100.0 0.0 X-RAY
 2010-06-30 SER A:61 A:1011 50.0 0.435 S -100.5 -15.8 50.0 0.435 0.0 HOH
 3.506
 OG
 O
SER B:61 B:1011 31.0 0.27 S -76.7 -11.8 NA NA NA
3mo2 1 Q9H9B1 100.0 0.0 X-RAY
 2010-06-30 SER A:61 A:1011 21.0 0.183 S -88.8 -15.5 21.0 0.183 0.0 HOH
 2.915
 O
 O
SER B:61 B:1011 28.0 0.243 S -83.5 -9.3 NA NA NA
SER C:61 C:1011 33.0 0.287 S -84.1 -29.1 NA NA NA
SER D:61 D:1011 21.0 0.183 S -92.1 -26.4 NA NA NA
3mo5 1 Q9H9B1 100.0 0.0 X-RAY
 2010-06-30 SER A:61 A:1011 22.0 0.191 S -90.6 -18.1 22.0 0.191 0.0 HOH
 2.809
 O
 O
SER B:61 B:1011 28.0 0.243 S -82.8 -13.6 NA NA NA
SER C:61 C:1011 31.0 0.27 S -86.8 -19.3 NA NA NA
SER D:61 D:1011 19.0 0.165 S -83.4 -16.1 NA NA NA
3sw9 1 Q9H9B1 100.0 0.0 X-RAY
 2011-12-07 SER A:61 A:1011 25.0 0.217 S -91.7 -18.4 25.0 0.217 0.0 HOH
 7.651
 O
 O
SER C:61 B:1011 29.0 0.252 S -101.4 -12.2 NA NA NA
3swc 1 Q9H9B1 100.0 0.0 X-RAY
 2011-11-30 SER A:61 A:1011 28.0 0.243 S -84.6 -12.3 28.0 0.243 0.0 HOH
 2.919
 N
 O
SER C:61 B:1011 27.0 0.235 S -94.0 -3.7 NA NA NA
3hna 1 Q9H9B1 100.0 0.0 X-RAY
 2009-06-09 SER A:63 A:1011 29.0 0.252 S -87.7 -13.9 29.0 0.252 0.0 HOH
 2.722
 OG
 O
SER B:63 B:1011 27.0 0.235 S -88.4 -14.6 NA NA NA
5ttg 1 Q9H9B1 100.0 0.0 X-RAY
 2017-02-01 SER A:63 A:1042 28.0 0.243 S -87.5 -15.9 28.0 0.243 0.0 GOL
UNX
UNX
HOH
 8.640
9.985
9.939
2.721
 O
O
C
O
 O1
UNK
UNK
O
SER B:63 B:1042 28.0 0.243 S -87.6 -13.8 NA NA NA
5v9j 1 Q9H9B1 100.0 0.0 X-RAY
 2018-03-21 SER A:63 A:1042 32.0 0.278 S -85.6 -16.3 31.0 0.27 0.008 B:Q9H9B1:0.009
 UNX
HOH
 9.969
2.755
 C
O
 UNK
O
SER B:63 B:1042 26.0 0.226 S -83.2 -14.4 26.0 0.226 0.0 HOH
 2.642
 O
 O
4i51 1 Q9H9B1 99.65 0.0 X-RAY
 2012-12-19 SER A:62 A:1011 32.0 0.278 S -90.2 -12.0 32.0 0.278 0.0 GOL
HOH
 9.669
2.659
 C
O
 O2
O
SER C:62 B:1011 34.0 0.296 S -84.5 -12.5 34.0 0.296 0.0 GOL
UNX
HOH
 9.738
9.809
2.754
 C
O
O
 C3
UNK
O
3fpd 1 Q9H9B1 100.0 0.0 X-RAY
 2009-02-17 SER A:37 A:1011 26.0 0.226 S -87.0 -3.7 26.0 0.226 0.0 HOH
 3.723
 OG
 O
SER B:37 B:1011 34.0 0.296 S -79.1 -12.0 33.0 0.287 0.009 A:Q9H9B1:0.009
 HOH
 3.261
 OG
 O
5tuz 1 Q9H9B1 100.0 0.0 X-RAY
 2017-02-22 SER A:37 A:1042 26.0 0.226 S -85.5 -12.6 26.0 0.226 0.0 HOH
 2.680
 O
 O
SER B:37 B:1042 26.0 0.226 S -89.7 -14.3 26.0 0.226 0.0 EDO
HOH
 9.879
2.649
 C
O
 O2
O
5vsd 1 Q9H9B1 100.0 0.0 X-RAY
 2017-07-12 SER A:37 A:1042 30.0 0.261 S -87.6 -16.2 30.0 0.261 0.0 HOH
 2.665
 O
 O
SER B:37 B:1042 33.0 0.287 S -87.9 -15.5 33.0 0.287 0.0 GOL
GOL
HOH
 9.943
8.575
2.774
 C
O
OG
 O1
O1
O
5vsf 1 Q9H9B1 100.0 0.0 X-RAY
 2017-07-12 SER A:37 A:1042 30.0 0.261 S -86.9 -13.7 30.0 0.261 0.0 GOL
HOH
 9.824
2.778
 C
O
 O3
O
SER B:37 B:1042 27.0 0.235 S -89.5 -13.2 27.0 0.235 0.0 GOL
HOH
 9.895
2.725
 C
OG
 O1
O
6mbo 1 Q9H9B1 100.0 0.0 X-RAY
 2019-02-27 SER A:37 A:1011 36.0 0.313 S -87.4 -14.4 35.0 0.304 0.009 B:Q9H9B1:0.009
 EDO
EDO
HOH
 8.164
9.058
2.610
 O
N
O
 O2
O1
O
SER B:37 B:1011 37.0 0.322 S -87.5 -12.5 36.0 0.313 0.009 A:Q9H9B1:0.009
 EDO
EDO
HOH
 8.132
9.072
2.660
 O
N
O
 O1
O1
O
6mbp 1 Q9H9B1 100.0 0.0 X-RAY
 2019-02-27 SER A:37 A:1011 31.0 0.27 S -88.0 -9.3 30.0 0.261 0.009 B:Q9H9B1:0.009
 EDO
EDO
EDO
EDO
HOH
 8.251
6.616
6.640
6.949
2.716
 O
OG
N
OG
O
 O1
O1
C1
C1
O
SER B:37 B:1011 30.0 0.261 S -90.3 -10.0 29.0 0.252 0.009 A:Q9H9B1:0.009
 HOH
 2.626
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h9b1-f1 1 Q9H9B1 100.0 0.0 SER A:1042 A:1042 27.0 0.235 S -92.6 1.3