Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr9 | 140708920 | . | G | A | CCDS7050.2:NM_024757.4:c.3218tGc>tAc_NP_079033.4:p.1073C>Y | Homo sapiens euchromatic histone lysine methyltransferase 1 (EHMT1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2igq | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2006-10-24 | CYS | A:92 | A:1042 | 2.0 | 0.015 | -60.8 | 116.8 | 2.0 | 0.015 | 0.0 |
ZN ZN ZN HOH |
4.215 4.926 2.225 3.088 |
SG SG SG SG |
ZN ZN ZN O |
|||
CYS | B:92 | B:1042 | 3.0 | 0.022 | -59.0 | 116.2 | 3.0 | 0.022 | 0.0 |
ZN ZN ZN HOH |
4.336 5.015 2.303 2.926 |
SG SG SG O |
ZN ZN ZN O |
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2rfi | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2007-10-23 | CYS | A:92 | A:1042 | 4.0 | 0.03 | -69.0 | 119.0 | 4.0 | 0.03 | 0.0 |
ZN ZN ZN HOH |
4.387 5.034 2.360 2.765 |
SG SG SG O |
ZN ZN ZN O |
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CYS | B:92 | B:1042 | 2.0 | 0.015 | -61.4 | 119.1 | NA | NA | NA | ||||||||||||||
3mo0 | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2010-06-30 | CYS | A:92 | A:1042 | 2.0 | 0.015 | -76.7 | 117.3 | 2.0 | 0.015 | 0.0 |
ZN ZN ZN HOH |
4.355 4.897 2.411 8.501 |
SG SG SG C |
ZN ZN ZN O |
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CYS | B:92 | B:1042 | 6.0 | 0.044 | -61.3 | 103.6 | NA | NA | NA | ||||||||||||||
3mo2 | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2010-06-30 | CYS | A:92 | A:1042 | 5.0 | 0.037 | -39.0 | 116.0 | 5.0 | 0.037 | 0.0 |
ZN ZN ZN HOH |
4.295 5.016 2.319 3.687 |
SG SG SG CB |
ZN ZN ZN O |
|||
CYS | B:92 | B:1042 | 3.0 | 0.022 | -65.6 | 111.3 | NA | NA | NA | ||||||||||||||
CYS | C:92 | C:1042 | 4.0 | 0.03 | -62.2 | 116.5 | NA | NA | NA | ||||||||||||||
CYS | D:92 | D:1042 | 4.0 | 0.03 | -49.7 | 116.6 | NA | NA | NA | ||||||||||||||
3mo5 | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2010-06-30 | CYS | A:92 | A:1042 | 4.0 | 0.03 | -53.9 | 113.4 | 4.0 | 0.03 | 0.0 |
ZN ZN ZN HOH |
4.305 4.990 2.341 2.890 |
SG SG SG O |
ZN ZN ZN O |
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CYS | B:92 | B:1042 | 4.0 | 0.03 | -78.7 | 111.2 | NA | NA | NA | ||||||||||||||
CYS | C:92 | C:1042 | 4.0 | 0.03 | -65.4 | 109.5 | NA | NA | NA | ||||||||||||||
CYS | D:92 | D:1042 | 3.0 | 0.022 | -58.0 | 114.3 | NA | NA | NA | ||||||||||||||
3sw9 | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | CYS | A:92 | A:1042 | 4.0 | 0.03 | -58.1 | 119.1 | 4.0 | 0.03 | 0.0 |
ZN ZN ZN HOH |
4.420 5.076 2.492 6.195 |
SG SG SG N |
ZN ZN ZN O |
|||
CYS | C:92 | B:1042 | 3.0 | 0.022 | -70.0 | 119.2 | NA | NA | NA | ||||||||||||||
3swc | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2011-11-30 | CYS | A:92 | A:1042 | 3.0 | 0.022 | -54.3 | 113.8 | 3.0 | 0.022 | 0.0 |
ZN ZN ZN HOH |
4.218 5.065 2.359 3.241 |
SG SG SG SG |
ZN ZN ZN O |
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CYS | C:92 | B:1042 | 3.0 | 0.022 | -70.7 | 115.7 | NA | NA | NA | ||||||||||||||
3hna | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2009-06-09 | CYS | A:94 | A:1042 | 2.0 | 0.015 | -81.1 | 113.6 | 2.0 | 0.015 | 0.0 |
ZN ZN ZN HOH |
4.234 4.998 2.340 2.798 |
SG SG SG O |
ZN ZN ZN O |
|||
CYS | B:94 | B:1042 | 3.0 | 0.022 | -58.5 | 118.5 | NA | NA | NA | ||||||||||||||
5ttg | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2017-02-01 | CYS | A:94 | A:1073 | 2.0 | 0.015 | -62.4 | 120.8 | 2.0 | 0.015 | 0.0 |
ZN ZN ZN HOH |
4.278 4.970 2.303 3.205 |
SG SG SG SG |
ZN ZN ZN O |
|||
CYS | B:94 | B:1073 | 4.0 | 0.03 | -66.1 | 118.6 | NA | NA | NA | ||||||||||||||
5v9j | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2018-03-21 | CYS | A:94 | A:1073 | 2.0 | 0.015 | -60.6 | 116.8 | 2.0 | 0.015 | 0.0 |
ZN ZN ZN HOH |
4.305 4.988 2.319 3.166 |
SG SG SG SG |
ZN ZN ZN O |
|||
CYS | B:94 | B:1073 | 4.0 | 0.03 | -62.9 | 119.0 | 4.0 | 0.03 | 0.0 |
ZN ZN ZN DMS HOH |
4.333 5.046 2.328 5.336 2.772 |
SG SG SG N O |
ZN ZN ZN S O |
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4i51 | 1 | Q9H9B1 | 99.65 | 0.0 |
X-RAY |
2012-12-19 | CYS | A:93 | A:1042 | 3.0 | 0.022 | -58.3 | 116.7 | 3.0 | 0.022 | 0.0 |
ZN ZN ZN GOL UNX HOH |
4.271 5.079 2.308 5.291 8.542 3.167 |
SG SG SG N O O |
ZN ZN ZN O3 UNK O |
|||
CYS | C:93 | B:1042 | 1.0 | 0.007 | -69.5 | 116.3 | 1.0 | 0.007 | 0.0 |
ZN ZN ZN HOH |
4.268 5.016 2.332 3.002 |
SG SG SG O |
ZN ZN ZN O |
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3fpd | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2009-02-17 | CYS | A:68 | A:1042 | 4.0 | 0.03 | -58.4 | 114.0 | 4.0 | 0.03 | 0.0 |
ZN ZN ZN HOH |
4.281 5.107 2.518 3.257 |
SG SG SG SG |
ZN ZN ZN O |
|||
CYS | B:68 | B:1042 | 3.0 | 0.022 | -67.6 | 115.5 | 3.0 | 0.022 | 0.0 |
ZN ZN ZN HOH |
4.225 5.053 2.396 3.649 |
SG SG SG N |
ZN ZN ZN O |
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5tuz | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2017-02-22 | CYS | A:68 | A:1073 | 2.0 | 0.015 | -62.3 | 117.3 | 2.0 | 0.015 | 0.0 |
ZN ZN ZN EDO HOH |
4.331 5.018 2.325 5.414 3.282 |
SG SG SG N SG |
ZN ZN ZN O2 O |
|||
CYS | B:68 | B:1073 | 2.0 | 0.015 | -67.0 | 117.9 | 2.0 | 0.015 | 0.0 |
ZN ZN ZN HOH |
4.298 4.993 2.354 3.174 |
SG SG SG SG |
ZN ZN ZN O |
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5vsd | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2017-07-12 | CYS | A:68 | A:1073 | 4.0 | 0.03 | -69.2 | 125.6 | 4.0 | 0.03 | 0.0 |
ZN ZN ZN DIO HOH |
4.418 5.104 2.420 5.685 2.646 |
SG SG SG N O |
ZN ZN ZN C2 O |
|||
CYS | B:68 | B:1073 | 2.0 | 0.015 | -70.4 | 125.4 | 2.0 | 0.015 | 0.0 |
ZN ZN ZN HOH |
4.201 4.933 2.328 3.228 |
SG SG SG SG |
ZN ZN ZN O |
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5vsf | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2017-07-12 | CYS | A:68 | A:1073 | 5.0 | 0.037 | -71.5 | 119.1 | 5.0 | 0.037 | 0.0 |
ZN ZN ZN DIO HOH |
4.420 5.054 2.335 5.526 2.736 |
SG SG SG N O |
ZN ZN ZN C2' O |
|||
CYS | B:68 | B:1073 | 2.0 | 0.015 | -71.6 | 119.3 | 2.0 | 0.015 | 0.0 |
ZN ZN ZN HOH |
4.260 5.023 2.306 3.205 |
SG SG SG SG |
ZN ZN ZN O |
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6mbo | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2019-02-27 | CYS | A:68 | A:1042 | 4.0 | 0.03 | -63.5 | 121.6 | 4.0 | 0.03 | 0.0 |
ZN ZN ZN EDO HOH |
5.025 4.308 2.334 5.473 3.049 |
SG SG SG N O |
ZN ZN ZN O2 O |
|||
CYS | B:68 | B:1042 | 3.0 | 0.022 | -63.7 | 120.1 | 3.0 | 0.022 | 0.0 |
ZN ZN ZN HOH |
2.333 5.008 4.316 3.087 |
SG SG SG O |
ZN ZN ZN O |
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6mbp | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2019-02-27 | CYS | A:68 | A:1042 | 4.0 | 0.03 | -63.4 | 120.1 | 4.0 | 0.03 | 0.0 |
ZN ZN ZN EDO HOH |
4.945 4.277 2.247 5.323 2.721 |
SG SG SG N O |
ZN ZN ZN O2 O |
|||
CYS | B:68 | B:1042 | 4.0 | 0.03 | -67.7 | 119.5 | 4.0 | 0.03 | 0.0 |
ZN ZN ZN EDO HOH |
2.314 5.004 4.281 5.175 3.264 |
SG SG SG N SG |
ZN ZN ZN O2 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q9h9b1-f1 | 1 | Q9H9B1 | 100.0 | 0.0 | CYS | A:1073 | A:1073 | 2.0 | 0.015 | -68.0 | 102.0 |