Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr9 | 140710472 | . | G | A | CCDS7050.2:NM_024757.4:c.3332tGc>tAc_NP_079033.4:p.1111C>Y | Homo sapiens euchromatic histone lysine methyltransferase 1 (EHMT1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2igq | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2006-10-24 | CYS | A:130 | A:1080 | 14.0 | 0.104 | S | -73.4 | 172.1 | 1.0 | 0.007 | 0.097 |
B:Q9H9B1:0.096 |
ZN ZN ZN HOH |
4.043 2.217 4.619 2.693 |
SG SG SG O |
ZN ZN ZN O |
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CYS | B:130 | B:1080 | 14.0 | 0.104 | S | -74.4 | 175.3 | 1.0 | 0.007 | 0.097 |
A:Q9H9B1:0.096 |
ZN ZN ZN HOH |
4.147 2.229 4.643 2.784 |
SG SG SG O |
ZN ZN ZN O |
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2rfi | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2007-10-23 | CYS | A:130 | A:1080 | 14.0 | 0.104 | S | -74.5 | 172.2 | 14.0 | 0.104 | 0.0 |
ZN ZN ZN HOH |
4.175 2.311 4.786 3.420 |
SG SG SG CB |
ZN ZN ZN O |
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CYS | B:130 | B:1080 | 14.0 | 0.104 | S | -71.8 | 169.9 | NA | NA | NA | |||||||||||||
3mo0 | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2010-06-30 | CYS | A:130 | A:1080 | 12.0 | 0.089 | S | -73.4 | 157.1 | 12.0 | 0.089 | 0.0 |
ZN ZN ZN HOH |
3.896 2.196 4.456 3.344 |
SG SG SG CA |
ZN ZN ZN O |
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CYS | B:130 | B:1080 | 14.0 | 0.104 | S | -64.6 | 170.8 | NA | NA | NA | |||||||||||||
3mo2 | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2010-06-30 | CYS | A:130 | A:1080 | 15.0 | 0.111 | S | -72.5 | 177.4 | 15.0 | 0.111 | 0.0 |
ZN ZN ZN HOH |
4.045 2.282 4.689 3.476 |
SG SG SG CA |
ZN ZN ZN O |
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CYS | B:130 | B:1080 | 14.0 | 0.104 | S | -77.0 | 170.7 | NA | NA | NA | |||||||||||||
CYS | C:130 | C:1080 | 13.0 | 0.096 | S | -56.9 | 170.8 | NA | NA | NA | |||||||||||||
CYS | D:130 | D:1080 | 17.0 | 0.126 | S | -90.3 | 174.1 | NA | NA | NA | |||||||||||||
3mo5 | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2010-06-30 | CYS | A:130 | A:1080 | 15.0 | 0.111 | S | -72.9 | 173.4 | 15.0 | 0.111 | 0.0 |
ZN ZN ZN HOH |
4.106 2.296 4.691 2.824 |
SG SG SG O |
ZN ZN ZN O |
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CYS | B:130 | B:1080 | 14.0 | 0.104 | S | -78.4 | 173.5 | NA | NA | NA | |||||||||||||
CYS | C:130 | C:1080 | 14.0 | 0.104 | S | -62.1 | 174.9 | NA | NA | NA | |||||||||||||
CYS | D:130 | D:1080 | 16.0 | 0.119 | S | -78.1 | 175.0 | NA | NA | NA | |||||||||||||
3sw9 | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | CYS | A:130 | A:1080 | 15.0 | 0.111 | S | -69.3 | 169.3 | 15.0 | 0.111 | 0.0 |
ZN ZN ZN HOH |
3.475 2.331 4.264 9.208 |
SG SG SG CB |
ZN ZN ZN O |
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CYS | C:130 | B:1080 | 12.0 | 0.089 | S | -64.2 | 169.2 | NA | NA | NA | |||||||||||||
3swc | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2011-11-30 | CYS | A:130 | A:1080 | 14.0 | 0.104 | S | -75.2 | 171.9 | 14.0 | 0.104 | 0.0 |
ZN ZN ZN HOH |
3.984 2.279 4.671 2.750 |
SG SG SG O |
ZN ZN ZN O |
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CYS | C:130 | B:1080 | 13.0 | 0.096 | S | -68.9 | 172.3 | NA | NA | NA | |||||||||||||
3hna | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2009-06-09 | CYS | A:132 | A:1080 | 13.0 | 0.096 | S | -71.9 | 174.0 | 13.0 | 0.096 | 0.0 |
ZN ZN ZN HOH |
4.116 2.314 4.732 3.493 |
SG SG SG CB |
ZN ZN ZN O |
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CYS | B:132 | B:1080 | 15.0 | 0.111 | S | -79.4 | 170.3 | NA | NA | NA | |||||||||||||
5ttg | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2017-02-01 | CYS | A:132 | A:1111 | 14.0 | 0.104 | S | -74.0 | 172.8 | 14.0 | 0.104 | 0.0 |
ZN ZN ZN UNX HOH |
4.066 2.291 4.687 6.615 3.464 |
SG SG SG C CA |
ZN ZN ZN UNK O |
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CYS | B:132 | B:1111 | 14.0 | 0.104 | S | -72.2 | 174.8 | NA | NA | NA | |||||||||||||
5v9j | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2018-03-21 | CYS | A:132 | A:1111 | 14.0 | 0.104 | S | -74.0 | 171.3 | 1.0 | 0.007 | 0.097 |
B:Q9H9B1:0.096 |
ZN ZN ZN UNX HOH |
4.094 2.316 4.716 6.783 2.717 |
SG SG SG C O |
ZN ZN ZN UNK O |
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CYS | B:132 | B:1111 | 14.0 | 0.104 | S | -76.0 | 173.3 | 1.0 | 0.007 | 0.097 |
A:Q9H9B1:0.096 |
ZN ZN ZN DMS UNX HOH |
4.194 2.317 4.774 7.768 8.118 2.775 |
SG SG SG CB C O |
ZN ZN ZN O UNK O |
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4i51 | 1 | Q9H9B1 | 99.65 | 0.0 |
X-RAY |
2012-12-19 | CYS | A:131 | A:1080 | 15.0 | 0.111 | S | -73.7 | 170.6 | 3.0 | 0.022 | 0.089 |
C:Q9H9B1:0.089 |
ZN ZN ZN GOL UNX HOH |
4.135 2.314 4.789 8.238 8.133 2.796 |
SG SG SG CB C O |
ZN ZN ZN O2 UNK O |
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CYS | C:131 | B:1080 | 15.0 | 0.111 | S | -81.3 | 171.8 | 2.0 | 0.015 | 0.096 |
A:Q9H9B1:0.096 |
ZN ZN ZN HOH |
4.154 2.339 4.753 2.883 |
SG SG SG O |
ZN ZN ZN O |
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3fpd | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2009-02-17 | CYS | A:106 | A:1080 | 14.0 | 0.104 | S | -71.4 | 170.7 | 1.0 | 0.007 | 0.097 |
B:Q9H9B1:0.096 |
ZN ZN ZN HOH |
3.987 2.402 4.759 2.676 |
SG SG CB O |
ZN ZN ZN O |
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CYS | B:106 | B:1080 | 15.0 | 0.111 | S | -68.8 | 172.5 | 2.0 | 0.015 | 0.096 |
A:Q9H9B1:0.096 |
ZN ZN ZN HOH |
3.928 2.273 4.670 2.786 |
SG SG SG O |
ZN ZN ZN O |
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5tuz | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2017-02-22 | CYS | A:106 | A:1111 | 14.0 | 0.104 | S | -74.3 | 175.2 | 1.0 | 0.007 | 0.097 |
B:Q9H9B1:0.096 |
ZN ZN ZN EDO HOH |
4.160 2.286 4.770 8.353 2.913 |
SG SG SG CB O |
ZN ZN ZN O1 O |
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CYS | B:106 | B:1111 | 15.0 | 0.111 | S | -78.9 | 171.9 | 1.0 | 0.007 | 0.104 |
A:Q9H9B1:0.104 |
ZN ZN ZN HOH |
4.104 2.323 4.714 2.882 |
SG SG SG O |
ZN ZN ZN O |
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5vsd | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2017-07-12 | CYS | A:106 | A:1111 | 14.0 | 0.104 | S | -69.1 | 174.3 | 1.0 | 0.007 | 0.097 |
B:Q9H9B1:0.096 |
ZN ZN ZN DIO HOH |
4.020 2.279 4.700 8.088 2.954 |
SG SG SG CB O |
ZN ZN ZN O1' O |
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CYS | B:106 | B:1111 | 14.0 | 0.104 | S | -71.8 | 174.2 | 1.0 | 0.007 | 0.097 |
A:Q9H9B1:0.096 |
ZN ZN ZN HOH |
4.183 2.286 4.698 3.020 |
SG SG SG O |
ZN ZN ZN O |
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5vsf | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2017-07-12 | CYS | A:106 | A:1111 | 14.0 | 0.104 | S | -75.0 | 174.7 | 1.0 | 0.007 | 0.097 |
B:Q9H9B1:0.096 |
ZN ZN ZN DIO HOH |
4.179 2.323 4.824 8.114 2.762 |
SG SG SG CB O |
ZN ZN ZN O1' O |
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CYS | B:106 | B:1111 | 15.0 | 0.111 | S | -76.3 | 173.7 | 2.0 | 0.015 | 0.096 |
A:Q9H9B1:0.096 |
ZN ZN ZN HOH |
4.160 2.316 4.769 2.832 |
SG SG SG O |
ZN ZN ZN O |
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6mbo | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2019-02-27 | CYS | A:106 | A:1080 | 15.0 | 0.111 | S | -76.2 | 174.7 | 2.0 | 0.015 | 0.096 |
B:Q9H9B1:0.096 |
JDG ZN ZN ZN EDO EDO HOH |
9.452 2.276 4.114 4.726 8.390 8.308 2.837 |
N SG SG SG CB O O |
C33 ZN ZN ZN C1 O1 O |
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CYS | B:106 | B:1080 | 15.0 | 0.111 | S | -77.7 | 172.7 | 1.0 | 0.007 | 0.104 |
A:Q9H9B1:0.104 |
EDO EDO JDG ZN ZN ZN HOH |
8.884 8.248 6.388 4.762 2.272 4.151 2.781 |
C O CA SG SG SG O |
O1 O1 C35 ZN ZN ZN O |
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6mbp | 1 | Q9H9B1 | 100.0 | 0.0 |
X-RAY |
2019-02-27 | CYS | A:106 | A:1080 | 15.0 | 0.111 | S | -74.5 | 174.2 | 3.0 | 0.022 | 0.089 |
B:Q9H9B1:0.089 |
ZN ZN ZN EDO EDO HOH |
2.263 4.074 4.721 8.584 9.034 2.798 |
SG SG SG CB N O |
ZN ZN ZN C1 O2 O |
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CYS | B:106 | B:1080 | 15.0 | 0.111 | S | -75.3 | 176.0 | 2.0 | 0.015 | 0.096 |
A:Q9H9B1:0.096 |
EDO EDO ZN ZN ZN EDO EDO HOH |
8.583 2.938 4.736 2.306 4.126 8.717 8.017 2.800 |
N O SG SG SG SG CB O |
O1 O2 ZN ZN ZN C2 O1 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q9h9b1-f1 | 1 | Q9H9B1 | 100.0 | 0.0 | CYS | A:1111 | A:1111 | 9.0 | 0.067 | S | -75.6 | 153.7 |