Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 140710472 . G A CCDS7050.2:NM_024757.4:c.3332tGc>tAc_NP_079033.4:p.1111C>Y Homo sapiens euchromatic histone lysine methyltransferase 1 (EHMT1), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2igq 1 Q9H9B1 100.0 0.0 X-RAY
2006-10-24 CYS A:130 A:1080 14.0 0.104 S -73.4 172.1 1.0 0.007 0.097 B:Q9H9B1:0.096
ZN
ZN
ZN
HOH
4.043
2.217
4.619
2.693
SG
SG
SG
O
ZN
ZN
ZN
O
CYS B:130 B:1080 14.0 0.104 S -74.4 175.3 1.0 0.007 0.097 A:Q9H9B1:0.096
ZN
ZN
ZN
HOH
4.147
2.229
4.643
2.784
SG
SG
SG
O
ZN
ZN
ZN
O
2rfi 1 Q9H9B1 100.0 0.0 X-RAY
2007-10-23 CYS A:130 A:1080 14.0 0.104 S -74.5 172.2 14.0 0.104 0.0 ZN
ZN
ZN
HOH
4.175
2.311
4.786
3.420
SG
SG
SG
CB
ZN
ZN
ZN
O
CYS B:130 B:1080 14.0 0.104 S -71.8 169.9 NA NA NA
3mo0 1 Q9H9B1 100.0 0.0 X-RAY
2010-06-30 CYS A:130 A:1080 12.0 0.089 S -73.4 157.1 12.0 0.089 0.0 ZN
ZN
ZN
HOH
3.896
2.196
4.456
3.344
SG
SG
SG
CA
ZN
ZN
ZN
O
CYS B:130 B:1080 14.0 0.104 S -64.6 170.8 NA NA NA
3mo2 1 Q9H9B1 100.0 0.0 X-RAY
2010-06-30 CYS A:130 A:1080 15.0 0.111 S -72.5 177.4 15.0 0.111 0.0 ZN
ZN
ZN
HOH
4.045
2.282
4.689
3.476
SG
SG
SG
CA
ZN
ZN
ZN
O
CYS B:130 B:1080 14.0 0.104 S -77.0 170.7 NA NA NA
CYS C:130 C:1080 13.0 0.096 S -56.9 170.8 NA NA NA
CYS D:130 D:1080 17.0 0.126 S -90.3 174.1 NA NA NA
3mo5 1 Q9H9B1 100.0 0.0 X-RAY
2010-06-30 CYS A:130 A:1080 15.0 0.111 S -72.9 173.4 15.0 0.111 0.0 ZN
ZN
ZN
HOH
4.106
2.296
4.691
2.824
SG
SG
SG
O
ZN
ZN
ZN
O
CYS B:130 B:1080 14.0 0.104 S -78.4 173.5 NA NA NA
CYS C:130 C:1080 14.0 0.104 S -62.1 174.9 NA NA NA
CYS D:130 D:1080 16.0 0.119 S -78.1 175.0 NA NA NA
3sw9 1 Q9H9B1 100.0 0.0 X-RAY
2011-12-07 CYS A:130 A:1080 15.0 0.111 S -69.3 169.3 15.0 0.111 0.0 ZN
ZN
ZN
HOH
3.475
2.331
4.264
9.208
SG
SG
SG
CB
ZN
ZN
ZN
O
CYS C:130 B:1080 12.0 0.089 S -64.2 169.2 NA NA NA
3swc 1 Q9H9B1 100.0 0.0 X-RAY
2011-11-30 CYS A:130 A:1080 14.0 0.104 S -75.2 171.9 14.0 0.104 0.0 ZN
ZN
ZN
HOH
3.984
2.279
4.671
2.750
SG
SG
SG
O
ZN
ZN
ZN
O
CYS C:130 B:1080 13.0 0.096 S -68.9 172.3 NA NA NA
3hna 1 Q9H9B1 100.0 0.0 X-RAY
2009-06-09 CYS A:132 A:1080 13.0 0.096 S -71.9 174.0 13.0 0.096 0.0 ZN
ZN
ZN
HOH
4.116
2.314
4.732
3.493
SG
SG
SG
CB
ZN
ZN
ZN
O
CYS B:132 B:1080 15.0 0.111 S -79.4 170.3 NA NA NA
5ttg 1 Q9H9B1 100.0 0.0 X-RAY
2017-02-01 CYS A:132 A:1111 14.0 0.104 S -74.0 172.8 14.0 0.104 0.0 ZN
ZN
ZN
UNX
HOH
4.066
2.291
4.687
6.615
3.464
SG
SG
SG
C
CA
ZN
ZN
ZN
UNK
O
CYS B:132 B:1111 14.0 0.104 S -72.2 174.8 NA NA NA
5v9j 1 Q9H9B1 100.0 0.0 X-RAY
2018-03-21 CYS A:132 A:1111 14.0 0.104 S -74.0 171.3 1.0 0.007 0.097 B:Q9H9B1:0.096
ZN
ZN
ZN
UNX
HOH
4.094
2.316
4.716
6.783
2.717
SG
SG
SG
C
O
ZN
ZN
ZN
UNK
O
CYS B:132 B:1111 14.0 0.104 S -76.0 173.3 1.0 0.007 0.097 A:Q9H9B1:0.096
ZN
ZN
ZN
DMS
UNX
HOH
4.194
2.317
4.774
7.768
8.118
2.775
SG
SG
SG
CB
C
O
ZN
ZN
ZN
O
UNK
O
4i51 1 Q9H9B1 99.65 0.0 X-RAY
2012-12-19 CYS A:131 A:1080 15.0 0.111 S -73.7 170.6 3.0 0.022 0.089 C:Q9H9B1:0.089
ZN
ZN
ZN
GOL
UNX
HOH
4.135
2.314
4.789
8.238
8.133
2.796
SG
SG
SG
CB
C
O
ZN
ZN
ZN
O2
UNK
O
CYS C:131 B:1080 15.0 0.111 S -81.3 171.8 2.0 0.015 0.096 A:Q9H9B1:0.096
ZN
ZN
ZN
HOH
4.154
2.339
4.753
2.883
SG
SG
SG
O
ZN
ZN
ZN
O
3fpd 1 Q9H9B1 100.0 0.0 X-RAY
2009-02-17 CYS A:106 A:1080 14.0 0.104 S -71.4 170.7 1.0 0.007 0.097 B:Q9H9B1:0.096
ZN
ZN
ZN
HOH
3.987
2.402
4.759
2.676
SG
SG
CB
O
ZN
ZN
ZN
O
CYS B:106 B:1080 15.0 0.111 S -68.8 172.5 2.0 0.015 0.096 A:Q9H9B1:0.096
ZN
ZN
ZN
HOH
3.928
2.273
4.670
2.786
SG
SG
SG
O
ZN
ZN
ZN
O
5tuz 1 Q9H9B1 100.0 0.0 X-RAY
2017-02-22 CYS A:106 A:1111 14.0 0.104 S -74.3 175.2 1.0 0.007 0.097 B:Q9H9B1:0.096
ZN
ZN
ZN
EDO
HOH
4.160
2.286
4.770
8.353
2.913
SG
SG
SG
CB
O
ZN
ZN
ZN
O1
O
CYS B:106 B:1111 15.0 0.111 S -78.9 171.9 1.0 0.007 0.104 A:Q9H9B1:0.104
ZN
ZN
ZN
HOH
4.104
2.323
4.714
2.882
SG
SG
SG
O
ZN
ZN
ZN
O
5vsd 1 Q9H9B1 100.0 0.0 X-RAY
2017-07-12 CYS A:106 A:1111 14.0 0.104 S -69.1 174.3 1.0 0.007 0.097 B:Q9H9B1:0.096
ZN
ZN
ZN
DIO
HOH
4.020
2.279
4.700
8.088
2.954
SG
SG
SG
CB
O
ZN
ZN
ZN
O1'
O
CYS B:106 B:1111 14.0 0.104 S -71.8 174.2 1.0 0.007 0.097 A:Q9H9B1:0.096
ZN
ZN
ZN
HOH
4.183
2.286
4.698
3.020
SG
SG
SG
O
ZN
ZN
ZN
O
5vsf 1 Q9H9B1 100.0 0.0 X-RAY
2017-07-12 CYS A:106 A:1111 14.0 0.104 S -75.0 174.7 1.0 0.007 0.097 B:Q9H9B1:0.096
ZN
ZN
ZN
DIO
HOH
4.179
2.323
4.824
8.114
2.762
SG
SG
SG
CB
O
ZN
ZN
ZN
O1'
O
CYS B:106 B:1111 15.0 0.111 S -76.3 173.7 2.0 0.015 0.096 A:Q9H9B1:0.096
ZN
ZN
ZN
HOH
4.160
2.316
4.769
2.832
SG
SG
SG
O
ZN
ZN
ZN
O
6mbo 1 Q9H9B1 100.0 0.0 X-RAY
2019-02-27 CYS A:106 A:1080 15.0 0.111 S -76.2 174.7 2.0 0.015 0.096 B:Q9H9B1:0.096
JDG
ZN
ZN
ZN
EDO
EDO
HOH
9.452
2.276
4.114
4.726
8.390
8.308
2.837
N
SG
SG
SG
CB
O
O
C33
ZN
ZN
ZN
C1
O1
O
CYS B:106 B:1080 15.0 0.111 S -77.7 172.7 1.0 0.007 0.104 A:Q9H9B1:0.104
EDO
EDO
JDG
ZN
ZN
ZN
HOH
8.884
8.248
6.388
4.762
2.272
4.151
2.781
C
O
CA
SG
SG
SG
O
O1
O1
C35
ZN
ZN
ZN
O
6mbp 1 Q9H9B1 100.0 0.0 X-RAY
2019-02-27 CYS A:106 A:1080 15.0 0.111 S -74.5 174.2 3.0 0.022 0.089 B:Q9H9B1:0.089
ZN
ZN
ZN
EDO
EDO
HOH
2.263
4.074
4.721
8.584
9.034
2.798
SG
SG
SG
CB
N
O
ZN
ZN
ZN
C1
O2
O
CYS B:106 B:1080 15.0 0.111 S -75.3 176.0 2.0 0.015 0.096 A:Q9H9B1:0.096
EDO
EDO
ZN
ZN
ZN
EDO
EDO
HOH
8.583
2.938
4.736
2.306
4.126
8.717
8.017
2.800
N
O
SG
SG
SG
SG
CB
O
O1
O2
ZN
ZN
ZN
C2
O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h9b1-f1 1 Q9H9B1 100.0 0.0 CYS A:1111 A:1111 9.0 0.067 S -75.6 153.7