Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33113472 . C A CCDS6535.1:NM_001497.3:c.1177Gac>Tac_NP_001488.2:p.393D>Y Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ASP A:272 A:393 74.0 0.493 E -97.6 112.4 74.0 0.493 0.0 HOH
 2.414
 HA
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ASP A:268 A:393 73.0 0.487 E -98.1 115.3 73.0 0.487 0.0 HOH
 2.900
 HA
 O
ASP B:268 B:393 80.0 0.533 E -97.8 114.8 80.0 0.533 0.0 HOH
 8.297
 O
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 ASP B:282 C:393 72.0 0.48 E -91.3 115.9 72.0 0.48 0.0 HOH
 3.150
 OD1
 O
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASP A:282 A:393 78.0 0.52 E -98.0 107.1 78.0 0.52 0.0 HOH
 2.997
 O
 O
ASP B:282 B:393 79.0 0.527 E -93.8 107.5 NA NA NA
ASP C:282 C:393 77.0 0.513 E -95.9 108.4 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASP A:282 A:393 77.0 0.513 E -99.0 110.2 77.0 0.513 0.0 GOL
HOH
 3.034
2.841
 OD2
OD2
 C3
O
ASP B:282 B:393 81.0 0.54 E -94.2 108.7 NA NA NA
ASP C:282 C:393 80.0 0.533 E -96.9 109.2 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASP A:282 A:393 78.0 0.52 E -97.4 110.8 78.0 0.52 0.0 GOL
HOH
 2.876
3.213
 OD2
O
 O2
O
ASP B:282 B:393 80.0 0.533 E -96.2 110.3 NA NA NA
ASP C:282 C:393 77.0 0.513 E -98.6 109.0 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASP A:282 A:393 78.0 0.52 E -97.5 109.3 78.0 0.52 0.0 GOL
HOH
 3.166
2.955
 OD2
OD2
 C3
O
ASP B:282 B:393 80.0 0.533 E -94.9 110.4 NA NA NA
ASP C:282 C:393 78.0 0.52 E -95.0 111.2 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASP A:282 A:393 78.0 0.52 E -99.9 109.1 78.0 0.52 0.0 HOH
 3.026
 OD2
 O
ASP B:282 B:393 81.0 0.54 E -96.0 108.2 NA NA NA
ASP C:282 C:393 81.0 0.54 E -99.5 111.0 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASP A:282 A:393 63.0 0.42 E -98.8 109.9 63.0 0.42 0.0 HOH
 2.841
 OD1
 O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASP A:282 A:393 60.0 0.4 E -102.0 107.5 60.0 0.4 0.0 HOH
 2.711
 OD2
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASP A:282 A:393 62.0 0.413 E -99.2 110.4 62.0 0.413 0.0 HOH
 2.838
 O
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 ASP A:282 A:393 79.0 0.527 E -97.0 113.2 79.0 0.527 0.0 SO4
GOL
HOH
 7.599
3.253
3.367
 O
OD2
CA
 O2
O2
O
ASP B:282 B:393 78.0 0.52 E -95.2 112.7 NA NA NA
ASP C:282 C:393 79.0 0.527 E -98.9 108.2 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:282 A:393 75.0 0.5 E -92.4 113.8 75.0 0.5 0.0 SO4
HOH
 6.340
2.495
 O
OD1
 O4
O
ASP B:282 B:393 80.0 0.533 E -92.8 108.3 NA NA NA
ASP C:282 C:393 81.0 0.54 E -103.4 111.3 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:282 A:393 80.0 0.533 E -97.0 111.7 80.0 0.533 0.0 SO4
HOH
 7.025
3.046
 O
O
 O4
O
ASP B:282 B:393 79.0 0.527 E -90.3 109.8 NA NA NA
ASP C:282 C:393 77.0 0.513 E -94.8 110.4 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:282 A:393 78.0 0.52 E -94.9 108.2 78.0 0.52 0.0 SO4
HOH
 6.575
3.190
 O
O
 O4
O
ASP B:282 B:393 77.0 0.513 E -93.7 107.2 NA NA NA
ASP C:282 C:393 78.0 0.52 E -99.8 111.9 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:282 A:393 80.0 0.533 E -96.8 109.9 80.0 0.533 0.0 HOH
 3.025
 O
 O
ASP B:282 B:393 80.0 0.533 E -92.6 109.7 NA NA NA
ASP C:282 C:393 79.0 0.527 E -92.9 107.4 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:282 A:393 77.0 0.513 E -93.5 114.3 77.0 0.513 0.0 HOH
 3.444
 CA
 O
ASP B:282 B:393 79.0 0.527 E -88.8 109.8 NA NA NA
ASP C:282 C:393 78.0 0.52 E -96.6 110.0 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:282 A:393 80.0 0.533 E -94.3 111.6 80.0 0.533 0.0 HOH
 3.009
 OD2
 O
ASP B:282 B:393 80.0 0.533 E -89.6 107.2 NA NA NA
ASP C:282 C:393 80.0 0.533 E -98.4 109.2 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:282 A:393 81.0 0.54 E -91.8 105.9 81.0 0.54 0.0 SO4
HOH
 7.295
3.119
 O
OD2
 O4
O
ASP B:282 B:393 79.0 0.527 E -90.3 114.0 NA NA NA
ASP C:282 C:393 77.0 0.513 E -97.7 113.3 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 ASP A:283 A:397 67.0 0.447 E -102.4 122.8 67.0 0.447 0.0 HOH
 3.716
 OD2
 O
ASP B:283 B:397 74.0 0.493 E -96.1 116.7 74.0 0.493 0.0 HOH
 6.676
 OD1
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 ASP A:283 A:397 65.0 0.433 E -114.9 107.9 65.0 0.433 0.0 HOH
 3.126
 OD2
 O
ASP B:283 B:397 64.0 0.427 E -111.5 110.0 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 ASP B:281 B:397 64.0 0.427 E -106.3 105.4 64.0 0.427 0.0 HOH
 2.998
 O
 O
ASP D:281 D:397 75.0 0.5 E -105.4 106.2 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 ASP B:281 B:397 59.0 0.393 E -111.4 109.0 59.0 0.393 0.0 HOH
 3.053
 CA
 O
ASP D:281 D:397 61.0 0.407 E -115.1 105.0 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 ASP B:281 B:397 58.0 0.387 E -113.8 104.3 58.0 0.387 0.0 HOH
 2.686
 O
 O
ASP D:281 D:397 66.0 0.44 E -104.3 102.8 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 ASP B:281 B:397 56.0 0.373 E -101.4 107.1 56.0 0.373 0.0 HOH
 2.901
 O
 O
ASP D:281 D:397 60.0 0.4 E -103.2 109.0 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 ASP B:281 B:397 58.0 0.387 E -112.4 104.4 58.0 0.387 0.0 HOH
 2.942
 OD2
 O
ASP D:281 D:397 58.0 0.387 E -116.4 105.1 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 ASP B:281 B:397 64.0 0.427 E -105.3 111.3 64.0 0.427 0.0 HOH
 3.086
 CA
 O
ASP D:281 D:799 67.0 0.447 E -105.7 103.7 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 ASP B:281 B:397 67.0 0.447 E -106.6 110.5 67.0 0.447 0.0 HOH
 2.988
 O
 O
ASP D:281 D:397 63.0 0.42 E -105.9 110.2 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 ASP B:281 B:397 65.0 0.433 E -108.7 110.0 65.0 0.433 0.0 HOH
 3.001
 O
 O
ASP D:281 D:397 66.0 0.44 E -100.7 108.5 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 ASP A:281 A:397 78.0 0.52 E -104.0 112.3 78.0 0.52 0.0 MES
HOH
 7.268
2.840
 N
OD2
 N4
O
ASP B:281 B:397 77.0 0.513 E -101.8 102.3 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 ASP B:281 B:397 63.0 0.42 E -106.5 113.8 63.0 0.42 0.0 HOH
 2.663
 OD2
 O
ASP D:281 D:397 63.0 0.42 E -96.3 112.4 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ASP A:281 A:397 79.0 0.527 E -100.6 107.8 79.0 0.527 0.0 MES
HOH
 5.338
2.702
 O
O
 C6
O
ASP B:281 B:397 79.0 0.527 E -99.3 109.5 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ASP A:281 A:397 77.0 0.513 E -109.3 109.7 77.0 0.513 0.0 DIO
HOH
 5.584
2.831
 OD1
OD2
 C2
O
ASP B:281 B:397 78.0 0.52 E -104.0 106.0 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ASP A:281 A:397 80.0 0.533 E -101.5 107.2 80.0 0.533 0.0 SO4
HOH
 5.333
2.791
 OD1
OD1
 O4
O
ASP B:281 B:397 79.0 0.527 E -100.8 107.3 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 ASP B:281 B:397 60.0 0.4 E -101.9 110.5 60.0 0.4 0.0 HOH
 2.632
 OD2
 O
ASP D:281 D:397 66.0 0.44 E -99.6 112.4 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 ASP A:281 A:397 74.0 0.493 E -100.4 112.1 74.0 0.493 0.0 SO4
HOH
 5.539
3.183
 OD1
O
 O3
O
ASP B:281 B:397 80.0 0.533 E -98.6 112.8 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 ASP A:281 A:397 73.0 0.487 E -103.2 106.0 73.0 0.487 0.0 HOH
 3.185
 OD2
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 ASP B:281 B:397 76.0 0.507 E -101.7 111.6 76.0 0.507 0.0 HOH
 3.320
 CA
 O
ASP D:281 D:397 60.0 0.4 E -110.3 110.1 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 ASP B:281 B:397 64.0 0.427 E -104.0 110.9 64.0 0.427 0.0 HOH
 2.953
 OD1
 O
ASP D:281 D:397 75.0 0.5 E -97.5 107.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 ASP A:393 A:393 70.0 0.467 E -84.0 128.0