Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33113508 . C A CCDS6535.1:NM_001497.3:c.1141Gta>Tta_NP_001488.2:p.381V>L Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 VAL A:260 A:381 59.0 0.381 E -126.9 132.8 59.0 0.381 0.0 HOH
 2.374
 H
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 VAL A:256 A:381 62.0 0.4 E -135.1 119.5 62.0 0.4 0.0 HOH
 3.805
 HA
 O
VAL B:256 B:381 60.0 0.387 E -134.4 120.4 60.0 0.387 0.0 HOH
 3.673
 HA
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 VAL B:270 C:381 66.0 0.426 E -132.4 113.4 66.0 0.426 0.0
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 VAL A:270 A:381 61.0 0.394 E -124.7 121.4 61.0 0.394 0.0 HOH
 3.867
 O
 O
VAL B:270 B:381 59.0 0.381 E -129.3 122.9 NA NA NA
VAL C:270 C:381 58.0 0.374 E -128.2 109.6 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 VAL A:270 A:381 58.0 0.374 E -123.9 121.4 58.0 0.374 0.0 HOH
 3.215
 N
 O
VAL B:270 B:381 61.0 0.394 E -132.7 120.9 NA NA NA
VAL C:270 C:381 60.0 0.387 E -123.3 113.0 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 VAL A:270 A:381 57.0 0.368 E -125.3 112.7 57.0 0.368 0.0 HOH
 3.282
 N
 O
VAL B:270 B:381 61.0 0.394 E -132.6 115.5 NA NA NA
VAL C:270 C:381 61.0 0.394 E -127.6 115.4 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 VAL A:270 A:381 58.0 0.374 E -128.3 119.0 58.0 0.374 0.0 HOH
 3.225
 O
 O
VAL B:270 B:381 60.0 0.387 E -132.9 118.3 NA NA NA
VAL C:270 C:381 62.0 0.4 E -126.3 118.3 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 VAL A:270 A:381 61.0 0.394 E -130.5 116.3 61.0 0.394 0.0 HOH
 3.102
 N
 O
VAL B:270 B:381 59.0 0.381 E -129.6 120.7 NA NA NA
VAL C:270 C:381 62.0 0.4 E -124.3 118.5 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 VAL A:270 A:381 69.0 0.445 E -132.3 121.6 69.0 0.445 0.0 HOH
 2.916
 O
 O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 VAL A:270 A:381 65.0 0.419 E -133.1 121.5 65.0 0.419 0.0 HOH
 2.918
 O
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 VAL A:270 A:381 69.0 0.445 E -131.3 120.1 69.0 0.445 0.0 HOH
 2.765
 O
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 VAL A:270 A:381 58.0 0.374 E -124.9 116.6 58.0 0.374 0.0 HOH
 3.193
 N
 O
VAL B:270 B:381 60.0 0.387 E -129.8 120.9 NA NA NA
VAL C:270 C:381 62.0 0.4 E -116.2 113.8 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:270 A:381 62.0 0.4 E -124.8 107.7 62.0 0.4 0.0 HOH
 3.276
 N
 O
VAL B:270 B:381 62.0 0.4 E -122.6 121.8 NA NA NA
VAL C:270 C:381 62.0 0.4 E -119.5 105.2 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:270 A:381 61.0 0.394 E -120.4 121.0 61.0 0.394 0.0 HOH
 3.041
 N
 O
VAL B:270 B:381 59.0 0.381 E -130.2 122.7 NA NA NA
VAL C:270 C:381 65.0 0.419 E -118.5 117.4 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:270 A:381 60.0 0.387 E -116.1 116.2 60.0 0.387 0.0 HOH
 3.054
 N
 O
VAL B:270 B:381 64.0 0.413 E -123.6 123.0 NA NA NA
VAL C:270 C:381 65.0 0.419 E -121.6 110.5 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:270 A:381 59.0 0.381 E -120.7 120.7 59.0 0.381 0.0 HOH
 2.500
 O
 O
VAL B:270 B:381 60.0 0.387 E -127.7 124.1 NA NA NA
VAL C:270 C:381 62.0 0.4 E -118.2 115.0 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:270 A:381 62.0 0.4 E -121.9 116.2 62.0 0.4 0.0 HOH
 2.935
 N
 O
VAL B:270 B:381 63.0 0.406 E -122.4 123.2 NA NA NA
VAL C:270 C:381 60.0 0.387 E -134.5 108.2 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:270 A:381 61.0 0.394 E -119.3 121.1 61.0 0.394 0.0 HOH
 3.614
 CG2
 O
VAL B:270 B:381 59.0 0.381 E -129.1 127.0 NA NA NA
VAL C:270 C:381 63.0 0.406 E -120.9 116.7 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:270 A:381 59.0 0.381 E -122.8 113.8 59.0 0.381 0.0 HOH
 3.862
 O
 O
VAL B:270 B:381 63.0 0.406 E -128.7 125.7 NA NA NA
VAL C:270 C:381 63.0 0.406 E -120.0 123.6 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 VAL A:271 A:385 66.0 0.426 E -130.5 122.4 66.0 0.426 0.0 HOH
 4.161
 N
 O
VAL B:271 B:385 64.0 0.413 E -130.4 126.1 64.0 0.413 0.0 HOH
 4.512
 N
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 VAL A:271 A:385 68.0 0.439 E -131.1 121.0 68.0 0.439 0.0 HOH
 7.654
 N
 O
VAL B:271 B:385 67.0 0.432 E -131.2 124.3 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 VAL B:269 B:385 63.0 0.406 E -117.2 119.1 63.0 0.406 0.0 HOH
 3.847
 CG2
 O
VAL D:269 D:385 68.0 0.439 E -125.4 123.0 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 VAL B:269 B:385 64.0 0.413 E -108.4 113.2 64.0 0.413 0.0 HOH
 3.925
 CG1
 O
VAL D:269 D:385 66.0 0.426 E -116.9 144.8 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 VAL B:269 B:385 64.0 0.413 E -117.4 112.5 64.0 0.413 0.0 UDP
PG4
HOH
 8.791
3.274
4.494
 C
CG2
N
 O2B
C7
O
VAL D:269 D:385 66.0 0.426 E -127.8 122.4 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 VAL B:269 B:385 65.0 0.419 E -124.8 116.1 65.0 0.419 0.0 HOH
 4.115
 CG2
 O
VAL D:269 D:385 65.0 0.419 E -128.0 120.2 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 VAL B:269 B:385 69.0 0.445 E -120.8 116.3 69.0 0.445 0.0 HOH
 4.413
 CG2
 O
VAL D:269 D:385 69.0 0.445 E -126.4 114.7 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 VAL B:269 B:385 67.0 0.432 E -113.1 116.8 67.0 0.432 0.0 UDP
HOH
 9.021
4.311
 C
N
 O2B
O
VAL D:269 D:787 67.0 0.432 E -120.4 113.0 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 VAL B:269 B:385 67.0 0.432 E -121.4 118.6 67.0 0.432 0.0 HOH
 4.167
 CG2
 O
VAL D:269 D:385 67.0 0.432 E -116.6 127.8 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 VAL B:269 B:385 66.0 0.426 E -116.2 120.1 66.0 0.426 0.0 HOH
 3.913
 CG2
 O
VAL D:269 D:385 68.0 0.439 E -127.3 126.1 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 VAL A:269 A:385 71.0 0.458 E -138.7 135.8 71.0 0.458 0.0 MES
HOH
 6.357
5.678
 N
CG2
 O1
O
VAL B:269 B:385 69.0 0.445 E -128.2 123.6 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 VAL B:269 B:385 68.0 0.439 E -122.7 122.0 68.0 0.439 0.0 UDP
HOH
 9.632
3.954
 C
CG2
 O2A
O
VAL D:269 D:385 68.0 0.439 E -126.6 128.1 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 VAL A:269 A:385 73.0 0.471 E -124.6 128.1 73.0 0.471 0.0 HOH
 4.272
 CA
 O
VAL B:269 B:385 64.0 0.413 E -132.5 125.2 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 VAL A:269 A:385 73.0 0.471 E -125.0 122.6 73.0 0.471 0.0 HOH
 4.132
 CG2
 O
VAL B:269 B:385 70.0 0.452 E -136.1 129.5 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 VAL A:269 A:385 73.0 0.471 E -125.9 116.3 73.0 0.471 0.0 HOH
 3.356
 CG1
 O
VAL B:269 B:385 73.0 0.471 E -130.0 129.4 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 VAL B:269 B:385 66.0 0.426 E -123.3 122.4 66.0 0.426 0.0 UDP
HOH
 9.340
4.173
 C
CG2
 O1A
O
VAL D:269 D:385 68.0 0.439 E -118.2 127.0 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 VAL A:269 A:385 77.0 0.497 E -129.2 132.9 77.0 0.497 0.0 HOH
 5.637
 CG2
 O
VAL B:269 B:385 73.0 0.471 E -119.1 121.0 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 VAL A:269 A:385 68.0 0.439 E -124.8 113.9 68.0 0.439 0.0 HOH
 2.942
 N
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 VAL B:269 B:385 69.0 0.445 E -119.9 122.1 69.0 0.445 0.0 HOH
 4.408
 N
 O
VAL D:269 D:385 66.0 0.426 E -111.7 119.9 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 VAL B:269 B:385 65.0 0.419 E -126.6 118.5 65.0 0.419 0.0 HOH
 3.706
 CG2
 O
VAL D:269 D:385 70.0 0.452 E -125.3 124.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 VAL A:381 A:381 68.0 0.439 E -136.5 111.5