Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr9 | 33113824 | . | A | C | CCDS6535.1:NM_001497.3:c.1012Tgt>Ggt_NP_001488.2:p.338C>G | Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6fwt | 1 | P15291 | 100.0 | 0.0 |
X-RAY |
2018-10-10 | CYS | A:217 | A:338 | 0.0 | 0.0 | E | -136.0 | 150.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.928 |
HG |
O |
||
| 6fwu | 1 | P15291 | 100.0 | 0.0 |
X-RAY |
2018-10-10 | CYS | A:213 | A:338 | 0.0 | 0.0 | E | -125.7 | 151.1 | 0.0 | 0.0 | 0.0 |
HOH |
4.319 |
HG |
O |
||
| CYS | B:213 | B:338 | 0.0 | 0.0 | E | -125.9 | 149.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.062 |
HG |
O |
|||||||||
| 4l41 | 2 | P15291 | 99.27 | 0.0 |
X-RAY |
2013-10-02 | THR | B:227 | C:338 | 0.0 | 0.0 | E | -152.3 | 134.7 | 0.0 | 0.0 | 0.0 |
HOH |
4.888 |
OG1 |
O |
||
| 2ae7 | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2005-10-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -137.6 | 144.0 | 0.0 | 0.0 | 0.0 |
HOH |
3.041 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -132.8 | 145.4 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -133.2 | 141.8 | NA | NA | NA | |||||||||||||
| 2aec | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2005-10-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -139.6 | 145.8 | 0.0 | 0.0 | 0.0 |
HOH |
3.024 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -135.3 | 141.9 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -134.0 | 140.2 | NA | NA | NA | |||||||||||||
| 2aes | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2005-10-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -137.6 | 144.2 | 0.0 | 0.0 | 0.0 |
HOH |
2.961 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -133.8 | 140.8 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -135.3 | 140.6 | NA | NA | NA | |||||||||||||
| 2agd | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2005-10-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -139.0 | 142.8 | 0.0 | 0.0 | 0.0 |
HOH |
2.949 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -137.2 | 141.1 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -134.8 | 139.3 | NA | NA | NA | |||||||||||||
| 2ah9 | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2005-10-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -140.4 | 142.6 | 0.0 | 0.0 | 0.0 |
HOH |
2.949 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -135.4 | 142.9 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -135.0 | 138.9 | NA | NA | NA | |||||||||||||
| 2fy7 | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2006-03-14 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -134.9 | 152.1 | 0.0 | 0.0 | 0.0 |
HOH |
2.660 |
OG1 |
O |
||
| 2fya | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2006-03-14 | THR | A:227 | A:338 | 1.0 | 0.007 | E | -135.4 | 151.8 | 1.0 | 0.007 | 0.0 |
HOH |
3.256 |
OG1 |
O |
||
| 2fyb | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2006-03-14 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -139.8 | 148.6 | 0.0 | 0.0 | 0.0 |
HOH |
2.665 |
OG1 |
O |
||
| 3ee5 | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2009-01-06 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -140.6 | 143.7 | 0.0 | 0.0 | 0.0 |
HOH |
2.920 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -132.5 | 142.6 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -134.4 | 138.7 | NA | NA | NA | |||||||||||||
| 4ee3 | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2012-07-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -141.0 | 142.9 | 0.0 | 0.0 | 0.0 |
HOH |
2.999 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -131.9 | 143.5 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -132.7 | 136.7 | NA | NA | NA | |||||||||||||
| 4ee4 | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2012-07-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -139.1 | 142.3 | 0.0 | 0.0 | 0.0 |
HOH |
2.946 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -135.9 | 140.1 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -130.5 | 136.9 | NA | NA | NA | |||||||||||||
| 4ee5 | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2012-07-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -144.8 | 137.9 | 0.0 | 0.0 | 0.0 |
HOH |
3.065 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -137.7 | 140.6 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -140.2 | 136.3 | NA | NA | NA | |||||||||||||
| 4eea | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2012-07-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -143.4 | 140.2 | 0.0 | 0.0 | 0.0 |
UDP HOH |
9.010 2.858 |
CG2 OG1 |
O3B O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -134.9 | 140.0 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -133.3 | 134.0 | NA | NA | NA | |||||||||||||
| 4eeg | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2012-07-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -144.3 | 139.9 | 0.0 | 0.0 | 0.0 |
HOH |
2.921 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -138.1 | 140.3 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -130.5 | 141.7 | NA | NA | NA | |||||||||||||
| 4eem | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2012-07-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -144.7 | 142.6 | 0.0 | 0.0 | 0.0 |
HOH |
3.073 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -138.9 | 141.3 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -135.4 | 137.6 | NA | NA | NA | |||||||||||||
| 4eeo | 1 | P15291 | 98.9 | 0.0 |
X-RAY |
2012-07-04 | THR | A:227 | A:338 | 0.0 | 0.0 | E | -140.8 | 139.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.325 |
OG1 |
O |
||
| THR | B:227 | B:338 | 0.0 | 0.0 | E | -138.2 | 140.2 | NA | NA | NA | |||||||||||||
| THR | C:227 | C:338 | 0.0 | 0.0 | E | -137.0 | 134.8 | NA | NA | NA | |||||||||||||
| 1fr8 | 1 | P08037 | 89.24 | 0.0 |
X-RAY |
2000-09-20 | CYS | A:228 | A:342 | 0.0 | 0.0 | E | -143.5 | 149.0 | 0.0 | 0.0 | 0.0 |
HOH |
4.349 |
SG |
O |
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| CYS | B:228 | B:342 | 0.0 | 0.0 | E | -141.0 | 157.0 | 0.0 | 0.0 | 0.0 |
GDU HOH |
9.848 2.336 |
CB SG |
O1B O |
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| 1fgx | 1 | P08037 | 88.89 | 0.0 |
X-RAY |
2000-08-16 | CYS | A:228 | A:342 | 0.0 | 0.0 | E | -150.5 | 150.3 | 0.0 | 0.0 | 0.0 |
HOH |
4.337 |
SG |
O |
||
| CYS | B:228 | B:342 | 1.0 | 0.007 | E | -146.9 | 152.8 | NA | NA | NA | |||||||||||||
| 1nf5 | 2 | P08037 | 90.48 | 0.0 |
X-RAY |
2002-12-25 | CYS | B:226 | B:342 | 0.0 | 0.0 | E | -136.0 | 153.8 | 0.0 | 0.0 | 0.0 |
HOH |
4.263 |
SG |
O |
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| CYS | D:226 | D:342 | 0.0 | 0.0 | E | -139.7 | 161.2 | NA | NA | NA | |||||||||||||
| 1nhe | 2 | P08037 | 90.48 | 0.0 |
X-RAY |
2003-01-07 | CYS | B:226 | B:342 | 1.0 | 0.007 | E | -135.0 | 137.0 | 1.0 | 0.007 | 0.0 |
UDP HOH |
9.421 4.183 |
CB SG |
O1B O |
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| CYS | D:226 | D:342 | 0.0 | 0.0 | E | -136.8 | 137.1 | NA | NA | NA | |||||||||||||
| 1nkh | 2 | P08037 | 90.48 | 0.0 |
X-RAY |
2003-01-14 | CYS | B:226 | B:342 | 0.0 | 0.0 | E | -138.7 | 159.7 | 0.0 | 0.0 | 0.0 |
HOH |
4.144 |
SG |
O |
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| CYS | D:226 | D:342 | 0.0 | 0.0 | E | -139.8 | 155.9 | NA | NA | NA | |||||||||||||
| 1nqi | 2 | P08037 | 90.48 | 0.0 |
X-RAY |
2003-02-04 | CYS | B:226 | B:342 | 0.0 | 0.0 | E | -143.4 | 152.3 | 0.0 | 0.0 | 0.0 |
HOH |
4.081 |
SG |
O |
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| CYS | D:226 | D:342 | 0.0 | 0.0 | E | -145.1 | 163.9 | NA | NA | NA | |||||||||||||
| 1nwg | 2 | P08037 | 90.48 | 0.0 |
X-RAY |
2003-02-18 | CYS | B:226 | B:342 | 0.0 | 0.0 | E | -147.9 | 144.8 | 0.0 | 0.0 | 0.0 |
HOH |
4.291 |
SG |
O |
||
| CYS | D:226 | D:342 | 0.0 | 0.0 | E | -142.4 | 176.9 | NA | NA | NA | |||||||||||||
| 1o23 | 2 | P08037 | 90.48 | 0.0 |
X-RAY |
2003-02-25 | CYS | B:226 | B:342 | 0.0 | 0.0 | E | -142.7 | 149.5 | 0.0 | 0.0 | 0.0 |
UPG HOH |
9.381 4.253 |
CB SG |
O2' O |
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| CYS | D:226 | D:744 | 0.0 | 0.0 | E | -144.2 | 161.0 | NA | NA | NA | |||||||||||||
| 1oqm | 2 | P08037 | 90.48 | 0.0 |
X-RAY |
2003-03-18 | CYS | B:226 | B:342 | 0.0 | 0.0 | E | -145.1 | 152.0 | 0.0 | 0.0 | 0.0 |
UD2 HOH |
7.722 4.108 |
CB SG |
C8' O |
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| CYS | D:226 | D:342 | 0.0 | 0.0 | E | -141.4 | 157.7 | NA | NA | NA | |||||||||||||
| 1nmm | 2 | P08037 | 90.11 | 0.0 |
X-RAY |
2003-01-21 | THR | B:226 | B:342 | 0.0 | 0.0 | E | -141.1 | 140.8 | 0.0 | 0.0 | 0.0 |
HOH |
3.019 |
OG1 |
O |
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| THR | D:226 | D:342 | 0.0 | 0.0 | E | -135.1 | 141.6 | NA | NA | NA | |||||||||||||
| 1o0r | 1 | P08037 | 90.11 | 0.0 |
X-RAY |
2003-03-04 | THR | A:226 | A:342 | 0.0 | 0.0 | E | -136.2 | 155.2 | 0.0 | 0.0 | 0.0 |
GDU MN HOH |
8.143 9.643 2.671 |
OG1 OG1 OG1 |
O2' MN O |
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| THR | B:226 | B:342 | 0.0 | 0.0 | E | -143.2 | 141.8 | NA | NA | NA | |||||||||||||
| 1yro | 2 | P08037 | 89.74 | 0.0 |
X-RAY |
2005-03-22 | THR | B:226 | B:342 | 0.0 | 0.0 | E | -144.6 | 141.3 | 0.0 | 0.0 | 0.0 |
GDU MN HOH |
8.664 9.880 3.033 |
CG2 CG2 OG1 |
O2' MN O |
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| THR | D:226 | D:342 | 0.0 | 0.0 | E | -141.5 | 147.9 | NA | NA | NA | |||||||||||||
| 1tvy | 1 | P08037 | 89.74 | 0.0 |
X-RAY |
2004-12-14 | THR | A:226 | A:342 | 0.0 | 0.0 | E | -149.8 | 153.0 | 0.0 | 0.0 | 0.0 |
GDU HOH |
8.761 3.326 |
OG1 CG2 |
O2' O |
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| THR | B:226 | B:342 | 0.0 | 0.0 | E | -139.7 | 149.6 | NA | NA | NA | |||||||||||||
| 1tw1 | 1 | P08037 | 89.74 | 0.0 |
X-RAY |
2004-12-14 | THR | A:226 | A:342 | 0.0 | 0.0 | E | -148.3 | 151.5 | 0.0 | 0.0 | 0.0 |
GDU HOH |
8.661 3.447 |
OG1 CG2 |
O2' O |
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| THR | B:226 | B:342 | 0.0 | 0.0 | E | -140.3 | 151.0 | NA | NA | NA | |||||||||||||
| 1tw5 | 1 | P08037 | 89.74 | 0.0 |
X-RAY |
2004-12-14 | THR | A:226 | A:342 | 0.0 | 0.0 | E | -148.2 | 153.6 | 0.0 | 0.0 | 0.0 |
HOH |
3.222 |
CG2 |
O |
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| THR | B:226 | B:342 | 0.0 | 0.0 | E | -149.0 | 152.2 | NA | NA | NA | |||||||||||||
| 2fyc | 2 | P08037 | 89.74 | 0.0 |
X-RAY |
2006-03-14 | THR | B:226 | B:342 | 0.0 | 0.0 | E | -135.2 | 137.0 | 0.0 | 0.0 | 0.0 |
GDU HOH |
8.856 3.124 |
CG2 OG1 |
O2' O |
||
| THR | D:226 | D:342 | 0.0 | 0.0 | E | -134.4 | 142.4 | NA | NA | NA | |||||||||||||
| 4krv | 1 | P08037 | 89.74 | 0.0 |
X-RAY |
2013-08-28 | THR | A:226 | A:342 | 1.0 | 0.007 | E | -131.8 | 151.4 | 1.0 | 0.007 | 0.0 |
MN HOH |
9.938 4.293 |
OG1 CG2 |
MN O |
||
| THR | B:226 | B:342 | 0.0 | 0.0 | E | -137.8 | 143.4 | NA | NA | NA | |||||||||||||
| 1pzt | 1 | P08037 | 89.74 | 0.0 |
X-RAY |
2003-09-16 | THR | A:226 | A:342 | 1.0 | 0.007 | E | -133.7 | 142.6 | 1.0 | 0.007 | 0.0 |
HOH |
4.308 |
OG1 |
O |
||
| 1pzy | 2 | P08037 | 89.74 | 0.0 |
X-RAY |
2003-09-02 | THR | B:226 | B:342 | 1.0 | 0.007 | E | -142.9 | 139.2 | 1.0 | 0.007 | 0.0 |
MN HOH |
9.586 4.456 |
CG2 OG1 |
MN O |
||
| THR | D:226 | D:342 | 0.0 | 0.0 | E | -135.8 | 134.2 | NA | NA | NA | |||||||||||||
| 2fyd | 2 | 21450879 | 89.38 | 0.0 |
X-RAY |
2006-03-14 | THR | B:226 | B:342 | 0.0 | 0.0 | E | -140.1 | 147.4 | 0.0 | 0.0 | 0.0 |
NGA HOH |
7.418 3.011 |
CG2 OG1 |
O7 O |
||
| THR | D:226 | D:342 | 0.0 | 0.0 | E | -143.0 | 143.4 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p15291-f1 | 1 | P15291 | 100.0 | 0.0 | CYS | A:338 | A:338 | 0.0 | 0.0 | E | -132.3 | 146.7 | |