Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33116046 . T A CCDS6535.1:NM_001497.3:c.902aAt>aTt_NP_001488.2:p.301N>I Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ASN A:180 A:301 27.0 0.169 T 63.6 36.5 27.0 0.169 0.0 HOH
 2.866
 HB2
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ASN A:176 A:301 26.0 0.163 T 60.3 35.1 26.0 0.163 0.0 HOH
 9.452
 HD21
 O
ASN B:176 B:301 27.0 0.169 T 60.1 35.7 27.0 0.169 0.0 HOH
 9.642
 HD21
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 ASN B:190 C:301 23.0 0.144 T 58.4 33.1 23.0 0.144 0.0 HOH
 4.008
 CA
 O
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASN A:190 A:301 23.0 0.144 T 60.5 35.7 23.0 0.144 0.0 HOH
 2.724
 OD1
 O
ASN B:190 B:301 26.0 0.163 T 60.0 41.3 NA NA NA
ASN C:190 C:301 25.0 0.156 T 62.0 37.4 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASN A:190 A:301 24.0 0.15 T 61.3 35.0 24.0 0.15 0.0 HOH
 2.570
 OD1
 O
ASN B:190 B:301 23.0 0.144 T 61.7 36.9 NA NA NA
ASN C:190 C:301 25.0 0.156 T 60.9 39.4 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASN A:190 A:301 26.0 0.163 T 59.5 36.0 26.0 0.163 0.0 GOL
HOH
 8.995
2.484
 N
OD1
 O2
O
ASN B:190 B:301 22.0 0.138 T 59.3 39.8 NA NA NA
ASN C:190 C:301 27.0 0.169 T 60.9 40.2 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASN A:190 A:301 25.0 0.156 T 60.5 35.8 25.0 0.156 0.0 GOL
HOH
 9.093
2.552
 N
OD1
 O2
O
ASN B:190 B:301 24.0 0.15 T 60.8 38.0 NA NA NA
ASN C:190 C:301 27.0 0.169 T 61.4 40.1 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASN A:190 A:301 25.0 0.156 T 61.0 37.2 25.0 0.156 0.0 GOL
HOH
 9.002
2.575
 N
OD1
 O2
O
ASN B:190 B:301 23.0 0.144 T 60.7 38.4 NA NA NA
ASN C:190 C:301 25.0 0.156 T 58.9 41.0 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASN A:190 A:301 19.0 0.119 T 59.3 41.7 19.0 0.119 0.0 HOH
 2.636
 OD1
 O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASN A:190 A:301 20.0 0.125 T 59.6 36.8 20.0 0.125 0.0 HOH
 2.601
 OD1
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASN A:190 A:301 21.0 0.131 T 59.4 40.2 21.0 0.131 0.0 HOH
 2.514
 OD1
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 ASN A:190 A:301 24.0 0.15 T 62.0 33.5 24.0 0.15 0.0 HOH
 2.673
 OD1
 O
ASN B:190 B:301 24.0 0.15 T 60.2 34.8 NA NA NA
ASN C:190 C:301 24.0 0.15 T 53.1 39.7 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:190 A:301 22.0 0.138 T 61.4 30.8 22.0 0.138 0.0 SO4
HOH
 7.731
4.415
 ND2
CA
 O4
O
ASN B:190 B:301 22.0 0.138 T 49.5 37.6 NA NA NA
ASN C:190 C:301 26.0 0.163 T 61.0 37.2 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:190 A:301 24.0 0.15 T 65.9 28.2 24.0 0.15 0.0 HOH
 2.500
 OD1
 O
ASN B:190 B:301 22.0 0.138 T 58.1 37.0 NA NA NA
ASN C:190 C:301 26.0 0.163 T 59.2 38.9 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:190 A:301 23.0 0.144 T 59.8 30.9 23.0 0.144 0.0 HOH
 2.521
 OD1
 O
ASN B:190 B:301 23.0 0.144 T 58.6 34.7 NA NA NA
ASN C:190 C:301 27.0 0.169 T 53.9 40.6 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:190 A:301 24.0 0.15 T 65.2 30.8 24.0 0.15 0.0 HOH
 2.658
 OD1
 O
ASN B:190 B:301 22.0 0.138 T 56.5 40.3 NA NA NA
ASN C:190 C:301 28.0 0.175 T 54.2 39.1 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:190 A:301 24.0 0.15 T 64.1 33.8 24.0 0.15 0.0 HOH
 2.524
 OD1
 O
ASN B:190 B:301 26.0 0.163 T 49.7 36.1 NA NA NA
ASN C:190 C:301 24.0 0.15 T 48.7 40.0 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:190 A:301 25.0 0.156 T 60.9 33.9 25.0 0.156 0.0 GOL
HOH
 7.827
2.544
 ND2
OD1
 O2
O
ASN B:190 B:301 23.0 0.144 T 53.9 34.7 NA NA NA
ASN C:190 C:301 25.0 0.156 T 54.1 42.1 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:190 A:301 24.0 0.15 T 57.4 27.9 24.0 0.15 0.0 SO4
HOH
 7.830
2.742
 ND2
OD1
 O4
O
ASN B:190 B:301 24.0 0.15 T 51.7 39.0 NA NA NA
ASN C:190 C:301 25.0 0.156 T 54.7 35.4 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 ASN A:191 A:305 19.0 0.119 T 62.1 42.5 19.0 0.119 0.0 HOH
 9.266
 OD1
 O
ASN B:191 B:305 17.0 0.106 T 64.7 39.4 17.0 0.106 0.0 HOH
 7.104
 OD1
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 ASN A:191 A:305 18.0 0.113 T 64.3 36.0 18.0 0.113 0.0 HOH
 2.681
 OD1
 O
ASN B:191 B:305 18.0 0.113 T 61.6 34.4 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 ASN B:189 B:305 24.0 0.15 T 59.8 39.2 24.0 0.15 0.0 HOH
 2.555
 ND2
 O
ASN D:189 D:305 28.0 0.175 T 59.5 36.5 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 ASN B:189 B:305 23.0 0.144 T 62.2 33.5 23.0 0.144 0.0 HOH
 2.713
 ND2
 O
ASN D:189 D:305 17.0 0.106 T 53.5 40.6 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 ASN B:189 B:305 26.0 0.163 T 59.1 34.5 26.0 0.163 0.0 HOH
 2.763
 ND2
 O
ASN D:189 D:305 26.0 0.163 T 60.4 33.9 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 ASN B:189 B:305 26.0 0.163 T 62.6 38.3 26.0 0.163 0.0 HOH
 2.571
 ND2
 O
ASN D:189 D:305 19.0 0.119 T 65.3 36.5 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 ASN B:189 B:305 23.0 0.144 T 59.1 42.6 23.0 0.144 0.0 HOH
 3.581
 ND2
 O
ASN D:189 D:305 17.0 0.106 T 68.3 37.4 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 ASN B:189 B:305 26.0 0.163 T 57.9 26.9 26.0 0.163 0.0 HOH
 4.384
 CA
 O
ASN D:189 D:707 17.0 0.106 T 58.3 39.0 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 ASN B:189 B:305 29.0 0.181 T 60.5 35.2 29.0 0.181 0.0 HOH
 2.682
 ND2
 O
ASN D:189 D:305 26.0 0.163 T 62.3 37.9 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 ASN B:189 B:305 28.0 0.175 T 61.4 36.7 28.0 0.175 0.0 HOH
 2.527
 ND2
 O
ASN D:189 D:305 28.0 0.175 T 61.8 37.5 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 ASN A:189 A:305 16.0 0.1 T 58.6 42.9 16.0 0.1 0.0 HOH
 3.053
 OD1
 O
ASN B:189 B:305 26.0 0.163 T 67.2 34.4 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 ASN B:189 B:305 27.0 0.169 T 59.6 39.6 27.0 0.169 0.0 HOH
 2.601
 ND2
 O
ASN D:189 D:305 26.0 0.163 T 65.0 33.7 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ASN A:189 A:305 25.0 0.156 T 59.8 35.0 25.0 0.156 0.0 HOH
 2.875
 OD1
 O
ASN B:189 B:305 20.0 0.125 T 60.6 39.6 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ASN A:189 A:305 27.0 0.169 T 64.0 32.9 27.0 0.169 0.0 HOH
 2.703
 OD1
 O
ASN B:189 B:305 19.0 0.119 T 65.6 36.1 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ASN A:189 A:305 27.0 0.169 T 68.8 36.3 27.0 0.169 0.0 HOH
 3.644
 CB
 O
ASN B:189 B:305 20.0 0.125 T 63.5 40.6 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 ASN B:189 B:305 28.0 0.175 T 58.9 39.4 28.0 0.175 0.0 HOH
 2.795
 ND2
 O
ASN D:189 D:305 27.0 0.169 T 66.4 35.1 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 ASN A:189 A:305 18.0 0.113 T 56.7 33.6 18.0 0.113 0.0 HOH
 2.442
 OD1
 O
ASN B:189 B:305 24.0 0.15 T 59.0 31.4 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 ASN A:189 A:305 18.0 0.113 T 59.6 37.4 18.0 0.113 0.0 HOH
 6.304
 ND2
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 ASN B:189 B:305 29.0 0.181 T 60.3 37.7 29.0 0.181 0.0 HOH
 7.240
 N
 O
ASN D:189 D:305 28.0 0.175 T 55.7 37.7 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 ASN B:189 B:305 27.0 0.169 T 59.0 41.2 27.0 0.169 0.0 HOH
 4.119
 CA
 O
ASN D:189 D:305 24.0 0.15 T 63.2 33.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 ASN A:301 A:301 24.0 0.15 T 58.2 34.8