Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33120463 . A C CCDS6535.1:NM_001497.3:c.790Tca>Gca_NP_001488.2:p.264S>A Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 SER A:143 A:264 116.0 1.0 S -68.0 -18.9 116.0 1.0 0.0 HOH
 2.114
 H
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 SER A:139 A:264 113.0 0.983 S -69.0 -21.6 113.0 0.983 0.0 HOH
 2.872
 O
 O
SER B:139 B:264 111.0 0.965 S -67.0 -20.1 111.0 0.965 0.0 HOH
 1.976
 H
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 SER B:153 C:264 106.0 0.922 S -74.0 -24.8 106.0 0.922 0.0 HOH
 6.729
 OG
 O
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 SER A:153 A:264 110.0 0.957 S -67.8 -18.9 110.0 0.957 0.0 SO4
HOH
 8.358
2.762
 N
O
 O1
O
SER B:153 B:264 113.0 0.983 S -64.0 -19.4 NA NA NA
SER C:153 C:264 111.0 0.965 S -62.7 -17.1 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 SER A:153 A:264 111.0 0.965 S -65.7 -21.6 111.0 0.965 0.0 SO4
HOH
 8.214
2.698
 N
O
 O1
O
SER B:153 B:264 112.0 0.974 S -62.4 -19.9 NA NA NA
SER C:153 C:264 113.0 0.983 S -61.4 -19.3 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 SER A:153 A:264 111.0 0.965 S -68.0 -16.9 111.0 0.965 0.0 SO4
GOL
HOH
 8.041
4.198
2.663
 N
O
O
 O1
O3
O
SER B:153 B:264 113.0 0.983 S -62.5 -17.3 NA NA NA
SER C:153 C:264 114.0 0.991 S -63.5 -15.9 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 SER A:153 A:264 111.0 0.965 S -65.4 -20.0 111.0 0.965 0.0 SO4
GOL
HOH
 8.408
4.494
2.664
 N
O
O
 O1
O3
O
SER B:153 B:264 111.0 0.965 S -64.6 -19.2 NA NA NA
SER C:153 C:264 112.0 0.974 S -61.5 -21.6 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 SER A:153 A:264 112.0 0.974 S -69.0 -18.2 112.0 0.974 0.0 GOL
SO4
HOH
 3.955
8.406
2.657
 O
N
O
 O3
O1
O
SER B:153 B:264 113.0 0.983 S -64.2 -20.7 NA NA NA
SER C:153 C:264 111.0 0.965 S -62.5 -21.6 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 SER A:153 A:264 106.0 0.922 S -64.8 -19.9 106.0 0.922 0.0 PGE
HOH
 3.531
2.700
 N
OG
 C6
O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 SER A:153 A:264 108.0 0.939 S -65.7 -16.3 108.0 0.939 0.0 PGE
HOH
 3.574
2.681
 N
OG
 C6
O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 SER A:153 A:264 106.0 0.922 S -62.8 -19.7 106.0 0.922 0.0 HOH
 2.611
 OG
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 SER A:153 A:264 110.0 0.957 S -69.0 -12.3 110.0 0.957 0.0 SO4
HOH
 8.360
2.776
 N
O
 O4
O
SER B:153 B:264 110.0 0.957 S -63.2 -23.3 NA NA NA
SER C:153 C:264 112.0 0.974 S -63.0 -15.2 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 SER A:153 A:264 111.0 0.965 S -79.4 -11.6 111.0 0.965 0.0 SO4
SO4
HOH
 8.143
2.272
2.846
 N
N
O
 O3
O3
O
SER B:153 B:264 112.0 0.974 S -77.7 -22.3 NA NA NA
SER C:153 C:264 111.0 0.965 S -65.5 -13.7 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 SER A:153 A:264 108.0 0.939 S -76.3 -14.0 108.0 0.939 0.0 SO4
HOH
 8.336
2.658
 N
O
 O2
O
SER B:153 B:264 113.0 0.983 S -69.7 -16.5 NA NA NA
SER C:153 C:264 112.0 0.974 S -67.0 -18.8 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 SER A:153 A:264 108.0 0.939 S -82.0 -8.0 108.0 0.939 0.0 SO4
HOH
 8.208
2.830
 N
O
 O2
O
SER B:153 B:264 109.0 0.948 S -77.2 -16.3 NA NA NA
SER C:153 C:264 112.0 0.974 S -66.5 -18.1 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 SER A:153 A:264 109.0 0.948 S -76.6 -15.6 109.0 0.948 0.0 SO4
HOH
 8.384
2.683
 N
O
 O2
O
SER B:153 B:264 112.0 0.974 S -72.5 -15.9 NA NA NA
SER C:153 C:264 110.0 0.957 S -72.2 -10.9 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 SER A:153 A:264 112.0 0.974 S -78.1 -8.2 112.0 0.974 0.0 SO4
HOH
 8.440
2.904
 N
O
 O2
O
SER B:153 B:264 111.0 0.965 S -74.1 -22.1 NA NA NA
SER C:153 C:264 112.0 0.974 S -67.0 -13.6 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 SER A:153 A:264 111.0 0.965 S -77.2 -8.7 111.0 0.965 0.0 SO4
HOH
 8.208
2.687
 N
O
 O3
O
SER B:153 B:264 112.0 0.974 S -76.2 -18.8 NA NA NA
SER C:153 C:264 112.0 0.974 S -68.6 -15.5 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 SER A:153 A:264 110.0 0.957 S -74.4 -8.1 110.0 0.957 0.0 HOH
 2.731
 O
 O
SER B:153 B:264 111.0 0.965 S -76.1 -18.4 NA NA NA
SER C:153 C:264 110.0 0.957 S -67.2 -17.4 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 SER A:154 A:268 103.0 0.896 S -63.1 -23.7 82.0 0.713 0.183 B:P08037:0.183
 HOH
 3.705
 N
 O
SER B:154 B:268 107.0 0.93 S -63.0 -24.2 107.0 0.93 0.0 HOH
 2.683
 O
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 SER A:154 A:268 109.0 0.948 S -67.5 -15.2 109.0 0.948 0.0 HOH
 3.393
 N
 O
SER B:154 B:268 109.0 0.948 S -69.5 -11.5 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 SER B:152 B:268 114.0 0.991 S -63.7 -19.9 114.0 0.991 0.0 PG4
HOH
 3.174
2.691
 OG
OG
 C2
O
SER D:152 D:268 114.0 0.991 S -59.5 -25.2 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 SER B:152 B:268 111.0 0.965 S -59.9 -18.6 111.0 0.965 0.0 HOH
 2.962
 N
 O
SER D:152 D:268 117.0 1.0 S -64.6 -26.8 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 SER B:152 B:268 113.0 0.983 S -58.6 -24.9 113.0 0.983 0.0 HOH
 2.709
 N
 O
SER D:152 D:268 117.0 1.0 S -72.6 -19.8 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 SER B:152 B:268 115.0 1.0 S -65.3 -23.6 115.0 1.0 0.0 HOH
 2.702
 O
 O
SER D:152 D:268 113.0 0.983 S -56.6 -16.8 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 SER B:152 B:268 116.0 1.0 S -61.9 -19.0 116.0 1.0 0.0 HOH
 2.655
 N
 O
SER D:152 D:268 112.0 0.974 S -49.9 -18.2 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 SER B:152 B:268 112.0 0.974 S -60.3 -12.6 112.0 0.974 0.0 HOH
 2.685
 O
 O
SER D:152 D:670 118.0 1.0 S -66.6 -15.2 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 SER B:152 B:268 112.0 0.974 S -60.6 -23.2 112.0 0.974 0.0 PG4
HOH
 4.777
2.720
 N
N
 O1
O
SER D:152 D:268 112.0 0.974 S -50.5 -31.7 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 SER B:152 B:268 112.0 0.974 S -63.7 -20.3 112.0 0.974 0.0 HOH
 2.813
 OG
 O
SER D:152 D:268 114.0 0.991 S -61.3 -22.6 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 SER A:152 A:268 113.0 0.983 S -60.0 -34.6 113.0 0.983 0.0 SO4
HOH
 3.093
2.680
 N
OG
 O3
O
SER B:152 B:268 107.0 0.93 S -66.9 -10.6 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 SER B:152 B:268 114.0 0.991 S -67.9 -18.6 114.0 0.991 0.0 HOH
 2.771
 O
 O
SER D:152 D:268 109.0 0.948 S -61.4 -21.4 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 SER A:152 A:268 117.0 1.0 S -53.6 -25.6 117.0 1.0 0.0 SO4
HOH
 2.775
3.207
 OG
O
 O4
O
SER B:152 B:268 111.0 0.965 S -63.4 -16.3 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 SER A:152 A:268 105.0 0.913 S -60.3 -14.5 105.0 0.913 0.0 SO4
HOH
 2.794
2.703
 N
OG
 O1
O
SER B:152 B:268 112.0 0.974 S -71.3 -11.6 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 SER A:152 A:268 111.0 0.965 S -61.0 -17.5 111.0 0.965 0.0 SO4
HOH
 3.025
2.858
 N
OG
 O2
O
SER B:152 B:268 105.0 0.913 S -63.9 -13.5 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 SER B:152 B:268 112.0 0.974 S -63.2 -25.5 112.0 0.974 0.0 HOH
 2.877
 N
 O
SER D:152 D:268 109.0 0.948 S -57.2 -27.6 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 SER A:152 A:268 116.0 1.0 S -66.2 -20.1 116.0 1.0 0.0 SO4
SO4
HOH
 7.841
3.400
4.977
 N
N
N
 O4
O4
O
SER B:152 B:268 108.0 0.939 S -67.8 -27.6 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 SER A:152 A:268 109.0 0.948 S -65.2 -13.9 109.0 0.948 0.0 SO4
HOH
 3.145
2.922
 N
O
 O2
O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 SER B:152 B:268 113.0 0.983 S -50.8 -39.3 113.0 0.983 0.0 HOH
 4.989
 N
 O
SER D:152 D:268 108.0 0.939 S -63.1 -16.4 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 SER B:152 B:268 110.0 0.957 S -69.4 -13.7 110.0 0.957 0.0 HOH
 2.642
 OG
 O
SER D:152 D:268 112.0 0.974 S -65.1 -21.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 SER A:264 A:264 114.0 0.991 S -54.5 -28.6