Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33120483 . T A CCDS6535.1:NM_001497.3:c.770cAt>cTt_NP_001488.2:p.257H>L Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 HIS A:136 A:257 90.0 0.462 T -74.7 -8.4 90.0 0.462 0.0 HOH
 2.675
 O
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 HIS A:132 A:257 80.0 0.41 T -72.2 -11.1 80.0 0.41 0.0 HOH
 5.377
 O
 O
HIS B:132 B:257 84.0 0.431 T -71.1 -10.2 84.0 0.431 0.0 HOH
 5.575
 O
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 HIS B:146 C:257 80.0 0.41 T -79.2 -15.8 80.0 0.41 0.0 HOH
 5.316
 O
 O
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 HIS A:146 A:257 76.0 0.39 T -85.8 -7.6 76.0 0.39 0.0 SO4
HOH
 5.806
2.626
 O
O
 O3
O
HIS B:146 B:257 85.0 0.436 T -82.3 -3.7 NA NA NA
HIS C:146 C:257 88.0 0.451 T -91.4 -6.0 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 HIS A:146 A:257 77.0 0.395 T -83.8 -7.2 77.0 0.395 0.0 SO4
HOH
 6.329
2.625
 O
O
 O3
O
HIS B:146 B:257 87.0 0.446 T -80.2 -5.4 NA NA NA
HIS C:146 C:257 90.0 0.462 T -91.1 -7.4 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 HIS A:146 A:257 97.0 0.497 T -81.3 -8.5 97.0 0.497 0.0 SO4
HOH
 6.305
2.644
 O
O
 O3
O
HIS B:146 B:257 87.0 0.446 T -78.2 -10.6 NA NA NA
HIS C:146 C:257 83.0 0.426 T -83.9 -9.6 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 HIS A:146 A:257 83.0 0.426 T -79.4 -8.5 83.0 0.426 0.0 SO4
HOH
 5.896
2.657
 O
O
 O3
O
HIS B:146 B:257 84.0 0.431 T -80.6 -5.0 NA NA NA
HIS C:146 C:257 98.0 0.503 T -87.4 -7.5 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 HIS A:146 A:257 75.0 0.385 T -83.7 -7.5 75.0 0.385 0.0 SO4
HOH
 5.909
2.635
 O
O
 O3
O
HIS B:146 B:257 86.0 0.441 T -78.3 -6.2 NA NA NA
HIS C:146 C:257 89.0 0.456 T -90.2 -6.3 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 HIS A:146 A:257 77.0 0.395 T -80.1 -5.3 77.0 0.395 0.0 HOH
 2.616
 O
 O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 HIS A:146 A:257 73.0 0.374 T -83.2 -3.4 73.0 0.374 0.0 HOH
 2.519
 O
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 HIS A:146 A:257 70.0 0.359 T -82.5 -6.3 70.0 0.359 0.0 HOH
 2.604
 O
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 HIS A:146 A:257 74.0 0.379 T -85.2 -8.8 74.0 0.379 0.0 SO4
HOH
 6.212
2.663
 O
O
 O1
O
HIS B:146 B:257 76.0 0.39 T -80.7 -1.5 NA NA NA
HIS C:146 C:257 87.0 0.446 T -90.4 -9.1 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 HIS A:146 A:257 72.0 0.369 T -77.0 -17.1 72.0 0.369 0.0 SO4
HOH
 6.447
2.623
 O
O
 O1
O
HIS B:146 B:257 73.0 0.374 T -71.2 -8.2 NA NA NA
HIS C:146 C:257 101.0 0.518 T -78.0 -5.9 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 HIS A:146 A:257 70.0 0.359 T -78.5 -6.5 70.0 0.359 0.0 SO4
HOH
 5.737
2.603
 O
O
 O3
O
HIS B:146 B:257 80.0 0.41 T -74.6 -5.6 NA NA NA
HIS C:146 C:257 82.0 0.421 T -84.5 -6.4 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 HIS A:146 A:257 70.0 0.359 T -77.3 -8.1 70.0 0.359 0.0 SO4
HOH
 6.029
2.578
 O
O
 O3
O
HIS B:146 B:257 86.0 0.441 T -72.7 -4.3 NA NA NA
HIS C:146 C:257 91.0 0.467 T -79.5 -4.7 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 HIS A:146 A:257 71.0 0.364 T -75.2 -9.8 71.0 0.364 0.0 SO4
HOH
 5.653
2.588
 O
O
 O3
O
HIS B:146 B:257 77.0 0.395 T -78.6 -0.7 NA NA NA
HIS C:146 C:257 84.0 0.431 T -81.4 -7.4 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 HIS A:146 A:257 74.0 0.379 T -78.0 -9.3 74.0 0.379 0.0 SO4
HOH
 5.916
2.597
 O
O
 O3
O
HIS B:146 B:257 84.0 0.431 T -74.4 -3.4 NA NA NA
HIS C:146 C:257 104.0 0.533 T -84.5 -3.1 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 HIS A:146 A:257 70.0 0.359 T -79.1 -7.7 70.0 0.359 0.0 SO4
HOH
 6.262
2.539
 O
O
 O1
O
HIS B:146 B:257 75.0 0.385 T -76.2 -5.9 NA NA NA
HIS C:146 C:257 106.0 0.544 T -85.7 -2.9 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 HIS A:146 A:257 71.0 0.364 T -78.5 -10.3 71.0 0.364 0.0 HOH
 2.604
 O
 O
HIS B:146 B:257 74.0 0.379 T -70.0 -6.3 NA NA NA
HIS C:146 C:257 101.0 0.518 T -78.1 -8.7 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 HIS A:147 A:261 72.0 0.369 T -81.6 -15.4 72.0 0.369 0.0 HOH
 4.705
 O
 O
HIS B:147 B:261 72.0 0.369 T -80.0 -4.4 72.0 0.369 0.0 HOH
 4.144
 CA
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 HIS A:147 A:261 73.0 0.374 T -85.0 -14.9 73.0 0.374 0.0 HOH
 5.254
 O
 O
HIS B:147 B:261 65.0 0.333 T -82.2 -13.6 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 HIS B:145 B:261 65.0 0.333 T -84.6 -9.4 65.0 0.333 0.0 HOH
 2.669
 O
 O
HIS D:145 D:261 59.0 0.303 T -82.4 -12.8 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 HIS B:145 B:261 61.0 0.313 T -82.5 -14.0 61.0 0.313 0.0 HOH
 3.264
 ND1
 O
HIS D:145 D:261 91.0 0.467 T -80.6 -16.8 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 HIS B:145 B:261 68.0 0.349 T -80.1 -13.6 68.0 0.349 0.0 HOH
 3.653
 O
 O
HIS D:145 D:261 95.0 0.487 T -76.3 -17.0 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 HIS B:145 B:261 63.0 0.323 T -82.4 -16.0 63.0 0.323 0.0 HOH
 2.959
 O
 O
HIS D:145 D:261 64.0 0.328 T -89.6 -12.3 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 HIS B:145 B:261 63.0 0.323 T -82.2 -14.1 63.0 0.323 0.0 HOH
 3.190
 ND1
 O
HIS D:145 D:261 71.0 0.364 T -86.2 -13.8 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 HIS B:145 B:261 59.0 0.303 T -80.4 -14.5 59.0 0.303 0.0 HOH
 2.985
 CD2
 O
HIS D:145 D:663 91.0 0.467 T -84.3 -8.6 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 HIS B:145 B:261 71.0 0.364 T -79.2 -18.8 71.0 0.364 0.0 HOH
 3.366
 ND1
 O
HIS D:145 D:261 61.0 0.313 T -80.0 -15.7 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 HIS B:145 B:261 66.0 0.338 T -83.8 -10.0 66.0 0.338 0.0 HOH
 2.778
 O
 O
HIS D:145 D:261 61.0 0.313 T -83.6 -12.3 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 HIS A:145 A:261 69.0 0.354 T -80.8 -7.6 69.0 0.354 0.0 HOH
 2.782
 NE2
 O
HIS B:145 B:261 71.0 0.364 T -86.5 -16.6 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 HIS B:145 B:261 59.0 0.303 T -81.9 -8.2 59.0 0.303 0.0 HOH
 2.551
 O
 O
HIS D:145 D:261 64.0 0.328 T -80.2 -10.8 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 HIS A:145 A:261 64.0 0.328 T -80.2 -10.1 64.0 0.328 0.0 HOH
 2.703
 O
 O
HIS B:145 B:261 63.0 0.323 T -82.6 -7.5 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 HIS A:145 A:261 66.0 0.338 T -81.8 -8.7 66.0 0.338 0.0 HOH
 2.822
 O
 O
HIS B:145 B:261 65.0 0.333 T -82.4 -3.1 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 HIS A:145 A:261 64.0 0.328 T -80.6 -13.3 64.0 0.328 0.0 HOH
 3.550
 CE1
 O
HIS B:145 B:261 64.0 0.328 T -79.5 -8.7 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 HIS B:145 B:261 65.0 0.333 T -81.0 -12.8 65.0 0.333 0.0 HOH
 2.660
 O
 O
HIS D:145 D:261 63.0 0.323 T -83.9 -9.1 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 HIS A:145 A:261 64.0 0.328 T -81.5 -11.5 64.0 0.328 0.0 SO4
HOH
 5.859
3.246
 O
O
 O2
O
HIS B:145 B:261 64.0 0.328 T -81.1 -22.8 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 HIS A:145 A:261 73.0 0.374 T -86.1 -5.8 73.0 0.374 0.0 HOH
 2.674
 O
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 HIS B:145 B:261 68.0 0.349 T -80.1 -10.0 68.0 0.349 0.0 HOH
 3.033
 NE2
 O
HIS D:145 D:261 62.0 0.318 T -84.0 -14.7 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 HIS B:145 B:261 67.0 0.344 T -82.3 -8.9 67.0 0.344 0.0 HOH
 2.704
 O
 O
HIS D:145 D:261 64.0 0.328 T -81.2 -7.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 HIS A:257 A:257 76.0 0.39 T -67.5 -10.5