Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33120553 . C A CCDS6535.1:NM_001497.3:c.700Gaa>Taa_NP_001488.2:p.234E>* Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 GLU A:113 A:234 21.0 0.111 H -70.2 -37.5 21.0 0.111 0.0 HOH
 2.590
 OE1
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 GLU A:109 A:234 19.0 0.1 H -77.5 -40.3 19.0 0.1 0.0 NO3
HOH
 9.156
8.209
 O
O
 O2
O
GLU B:109 B:234 20.0 0.105 H -76.7 -41.2 20.0 0.105 0.0 NO3
HOH
 8.920
9.401
 O
O
 O2
O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 GLU B:123 C:234 12.0 0.063 H -81.6 -27.3 12.0 0.063 0.0
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 GLU A:123 A:234 20.0 0.105 H -74.0 -41.5 20.0 0.105 0.0 HOH
 4.883
 N
 O
GLU B:123 B:234 17.0 0.089 H -68.9 -39.0 NA NA NA
GLU C:123 C:234 19.0 0.1 H -66.0 -33.7 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 GLU A:123 A:234 22.0 0.116 H -74.8 -40.2 22.0 0.116 0.0 HOH
 3.043
 O
 O
GLU B:123 B:234 18.0 0.095 H -70.5 -41.7 NA NA NA
GLU C:123 C:234 22.0 0.116 H -68.2 -35.0 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 GLU A:123 A:234 21.0 0.111 H -74.0 -39.0 21.0 0.111 0.0 HOH
 2.706
 OE2
 O
GLU B:123 B:234 17.0 0.089 H -72.0 -42.4 NA NA NA
GLU C:123 C:234 21.0 0.111 H -70.7 -39.0 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 GLU A:123 A:234 21.0 0.111 H -73.4 -38.7 21.0 0.111 0.0 HOH
 2.674
 OE2
 O
GLU B:123 B:234 18.0 0.095 H -72.0 -38.7 NA NA NA
GLU C:123 C:234 20.0 0.105 H -69.3 -35.5 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 GLU A:123 A:234 22.0 0.116 H -73.9 -38.6 22.0 0.116 0.0 HOH
 4.928
 N
 O
GLU B:123 B:234 17.0 0.089 H -74.2 -38.3 NA NA NA
GLU C:123 C:234 19.0 0.1 H -68.4 -35.6 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 GLU A:123 A:234 19.0 0.1 H -77.7 -37.6 19.0 0.1 0.0 HOH
 2.720
 OE1
 O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 GLU A:123 A:234 20.0 0.105 H -76.4 -40.1 20.0 0.105 0.0 HOH
 2.642
 OE1
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 GLU A:123 A:234 19.0 0.1 H -77.2 -36.4 19.0 0.1 0.0 HOH
 2.706
 OE1
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 GLU A:123 A:234 23.0 0.121 H -68.9 -40.4 23.0 0.121 0.0 SO4
HOH
 4.797
3.099
 OE1
O
 O3
O
GLU B:123 B:234 18.0 0.095 H -70.0 -39.1 NA NA NA
GLU C:123 C:234 21.0 0.111 H -70.9 -35.8 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 GLU A:123 A:234 22.0 0.116 H -70.6 -37.2 22.0 0.116 0.0 SO4
HOH
 5.115
3.383
 OE1
O
 O3
O
GLU B:123 B:234 19.0 0.1 H -77.2 -41.9 NA NA NA
GLU C:123 C:234 20.0 0.105 H -70.5 -37.7 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 GLU A:123 A:234 21.0 0.111 H -79.0 -36.6 21.0 0.111 0.0 SO4
HOH
 5.265
3.175
 OE1
O
 O4
O
GLU B:123 B:234 18.0 0.095 H -74.0 -39.6 NA NA NA
GLU C:123 C:234 20.0 0.105 H -68.3 -37.8 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 GLU A:123 A:234 21.0 0.111 H -71.6 -38.0 21.0 0.111 0.0 SO4
HOH
 5.014
3.181
 OE1
O
 O1
O
GLU B:123 B:234 18.0 0.095 H -59.9 -45.6 NA NA NA
GLU C:123 C:234 21.0 0.111 H -71.6 -36.3 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 GLU A:123 A:234 23.0 0.121 H -74.3 -39.0 23.0 0.121 0.0 HOH
 4.132
 OE1
 O
GLU B:123 B:234 19.0 0.1 H -71.9 -41.0 NA NA NA
GLU C:123 C:234 20.0 0.105 H -67.5 -39.3 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 GLU A:123 A:234 21.0 0.111 H -71.8 -39.4 21.0 0.111 0.0 HOH
 3.244
 O
 O
GLU B:123 B:234 18.0 0.095 H -77.9 -43.7 NA NA NA
GLU C:123 C:234 20.0 0.105 H -67.2 -37.6 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 GLU A:123 A:234 22.0 0.116 H -73.0 -38.3 22.0 0.116 0.0 HOH
 2.618
 OE2
 O
GLU B:123 B:234 20.0 0.105 H -71.7 -43.6 NA NA NA
GLU C:123 C:234 19.0 0.1 H -74.2 -38.8 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 GLU A:123 A:234 24.0 0.126 H -71.3 -48.3 24.0 0.126 0.0 SO4
HOH
 4.544
4.323
 OE1
OE1
 O3
O
GLU B:123 B:234 21.0 0.111 H -66.4 -47.5 NA NA NA
GLU C:123 C:234 21.0 0.111 H -72.5 -27.0 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 GLU A:124 A:238 13.0 0.068 H -69.5 -40.9 13.0 0.068 0.0 HOH
 2.960
 O
 O
GLU B:124 B:238 14.0 0.074 H -72.4 -36.3 14.0 0.074 0.0 HOH
 9.440
 O
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 GLU A:124 A:238 15.0 0.079 H -70.7 -42.6 15.0 0.079 0.0 HOH
 7.107
 OE2
 O
GLU B:124 B:238 16.0 0.084 H -75.6 -37.1 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 GLU B:122 B:238 13.0 0.068 H -66.9 -41.5 13.0 0.068 0.0 HOH
 2.657
 OE2
 O
GLU D:122 D:238 16.0 0.084 H -62.8 -39.5 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 GLU B:122 B:238 12.0 0.063 H -73.0 -28.9 12.0 0.063 0.0 HOH
 5.969
 OE1
 O
GLU D:122 D:238 9.0 0.047 H -42.5 -38.8 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 GLU B:122 B:238 11.0 0.058 H -74.8 -32.2 11.0 0.058 0.0 PG4
HOH
 4.356
3.084
 OE2
OE2
 O5
O
GLU D:122 D:238 11.0 0.058 H -58.3 -39.8 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 GLU B:122 B:238 16.0 0.084 H -68.4 -39.5 16.0 0.084 0.0 HOH
 2.681
 OE2
 O
GLU D:122 D:238 14.0 0.074 H -73.6 -35.4 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 GLU B:122 B:238 11.0 0.058 H -61.3 -41.9 11.0 0.058 0.0 HOH
 2.749
 OE2
 O
GLU D:122 D:238 14.0 0.074 H -69.7 -46.7 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 GLU B:122 B:238 10.0 0.053 H -67.5 -47.7 10.0 0.053 0.0 HOH
 4.574
 N
 O
GLU D:122 D:640 13.0 0.068 H -62.9 -45.0 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 GLU B:122 B:238 11.0 0.058 H -65.4 -38.3 11.0 0.058 0.0 HOH
 2.918
 OE2
 O
GLU D:122 D:238 15.0 0.079 H -68.5 -36.5 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 GLU B:122 B:238 13.0 0.068 H -67.8 -43.5 13.0 0.068 0.0 HOH
 2.625
 OE2
 O
GLU D:122 D:238 15.0 0.079 H -64.7 -41.3 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 GLU A:122 A:238 20.0 0.105 H -70.1 -36.7 20.0 0.105 0.0 HOH
 2.820
 OE2
 O
GLU B:122 B:238 19.0 0.1 H -65.2 -45.1 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 GLU B:122 B:238 13.0 0.068 H -69.5 -38.0 13.0 0.068 0.0 HOH
 2.562
 OE2
 O
GLU D:122 D:238 14.0 0.074 H -68.4 -36.7 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 GLU A:122 A:238 18.0 0.095 H -65.4 -34.8 18.0 0.095 0.0 HOH
 2.512
 OE2
 O
GLU B:122 B:238 18.0 0.095 H -64.3 -37.5 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 GLU A:122 A:238 16.0 0.084 H -61.4 -40.4 16.0 0.084 0.0 HOH
 3.448
 OE2
 O
GLU B:122 B:238 20.0 0.105 H -75.2 -42.2 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 GLU A:122 A:238 13.0 0.068 H -68.8 -37.6 13.0 0.068 0.0 HOH
 3.171
 OE2
 O
GLU B:122 B:238 19.0 0.1 H -70.1 -35.3 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 GLU B:122 B:238 14.0 0.074 H -64.7 -41.6 14.0 0.074 0.0 HOH
 2.557
 O
 O
GLU D:122 D:238 14.0 0.074 H -67.2 -41.4 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 GLU A:122 A:238 20.0 0.105 H -64.9 -41.2 20.0 0.105 0.0 HOH
 2.820
 OE2
 O
GLU B:122 B:238 16.0 0.084 H -67.9 -37.6 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 GLU A:122 A:238 16.0 0.084 H -66.5 -39.5 16.0 0.084 0.0 HOH
 2.673
 OE1
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 GLU B:122 B:238 14.0 0.074 H -51.5 -46.1 14.0 0.074 0.0 HOH
 5.147
 N
 O
GLU D:122 D:238 14.0 0.074 H -65.8 -40.7 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 GLU B:122 B:238 16.0 0.084 H -73.0 -31.4 16.0 0.084 0.0 HOH
 2.614
 O
 O
GLU D:122 D:238 17.0 0.089 H -66.8 -38.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 GLU A:234 A:234 16.0 0.084 H -73.7 -41.3