Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33120603 . G A CCDS6535.1:NM_001497.3:c.650gCg>gTg_NP_001488.2:p.217A>V Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ALA A:96 A:217 30.0 0.261 -71.2 147.6 30.0 0.261 0.0 HOH
 2.689
 O
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ALA A:92 A:217 16.0 0.139 -63.0 144.0 16.0 0.139 0.0 HOH
 3.068
 O
 O
ALA B:92 B:217 23.0 0.2 -66.4 149.7 23.0 0.2 0.0 HOH
 5.969
 HA
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 ALA B:106 C:217 26.0 0.226 -76.9 132.4 26.0 0.226 0.0 HOH
 2.915
 O
 O
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ALA A:106 A:217 21.0 0.183 -66.3 157.2 21.0 0.183 0.0 HOH
 2.682
 O
 O
ALA B:106 B:217 19.0 0.165 -72.8 155.4 NA NA NA
ALA C:106 C:217 24.0 0.209 -67.5 145.4 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ALA A:106 A:217 20.0 0.174 -66.6 154.7 20.0 0.174 0.0 GOL
HOH
 3.759
2.776
 O
O
 C3
O
ALA B:106 B:217 20.0 0.174 -72.4 155.6 NA NA NA
ALA C:106 C:217 23.0 0.2 -69.2 147.9 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ALA A:106 A:217 21.0 0.183 -67.1 157.0 21.0 0.183 0.0 GOL
HOH
 3.808
2.609
 O
O
 O1
O
ALA B:106 B:217 19.0 0.165 -71.2 158.1 NA NA NA
ALA C:106 C:217 21.0 0.183 -66.2 148.5 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ALA A:106 A:217 21.0 0.183 -68.8 155.4 21.0 0.183 0.0 GOL
HOH
 3.550
2.699
 O
O
 C3
O
ALA B:106 B:217 19.0 0.165 -74.7 155.5 NA NA NA
ALA C:106 C:217 22.0 0.191 -68.0 146.3 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ALA A:106 A:217 20.0 0.174 -68.3 158.2 20.0 0.174 0.0 HOH
 2.760
 O
 O
ALA B:106 B:217 21.0 0.183 -71.6 154.4 NA NA NA
ALA C:106 C:217 22.0 0.191 -68.9 149.3 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ALA A:106 A:217 20.0 0.174 -71.9 153.7 20.0 0.174 0.0 HOH
 2.631
 O
 O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ALA A:106 A:217 19.0 0.165 -71.8 157.3 19.0 0.165 0.0 HOH
 2.640
 O
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ALA A:106 A:217 20.0 0.174 -69.5 153.5 20.0 0.174 0.0 HOH
 2.606
 O
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 ALA A:106 A:217 21.0 0.183 -67.9 157.1 21.0 0.183 0.0 GOL
HOH
 3.625
2.825
 O
O
 C3
O
ALA B:106 B:217 18.0 0.157 -78.9 154.8 NA NA NA
ALA C:106 C:217 20.0 0.174 -68.8 144.2 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ALA A:106 A:217 20.0 0.174 -62.8 153.3 20.0 0.174 0.0 HOH
 2.676
 O
 O
ALA B:106 B:217 20.0 0.174 -73.9 149.8 NA NA NA
ALA C:106 C:217 23.0 0.2 -65.3 149.1 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ALA A:106 A:217 20.0 0.174 -59.1 148.3 20.0 0.174 0.0 HOH
 2.645
 O
 O
ALA B:106 B:217 20.0 0.174 -73.9 149.1 NA NA NA
ALA C:106 C:217 24.0 0.209 -62.3 145.1 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ALA A:106 A:217 21.0 0.183 -56.3 153.3 21.0 0.183 0.0 HOH
 2.703
 O
 O
ALA B:106 B:217 18.0 0.157 -77.4 150.0 NA NA NA
ALA C:106 C:217 20.0 0.174 -61.6 146.4 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ALA A:106 A:217 20.0 0.174 -62.1 151.9 20.0 0.174 0.0 HOH
 2.585
 O
 O
ALA B:106 B:217 20.0 0.174 -69.1 150.4 NA NA NA
ALA C:106 C:217 22.0 0.191 -57.9 143.3 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ALA A:106 A:217 22.0 0.191 -58.6 157.2 22.0 0.191 0.0 HOH
 2.710
 O
 O
ALA B:106 B:217 18.0 0.157 -72.6 152.0 NA NA NA
ALA C:106 C:217 22.0 0.191 -68.2 146.7 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ALA A:106 A:217 20.0 0.174 -63.9 157.4 20.0 0.174 0.0 HOH
 2.733
 O
 O
ALA B:106 B:217 18.0 0.157 -74.2 154.6 NA NA NA
ALA C:106 C:217 22.0 0.191 -57.8 147.9 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ALA A:106 A:217 21.0 0.183 -58.4 158.6 21.0 0.183 0.0 HOH
 2.773
 O
 O
ALA B:106 B:217 18.0 0.157 -75.7 149.4 NA NA NA
ALA C:106 C:217 22.0 0.191 -71.6 141.6 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 ALA A:107 A:221 39.0 0.339 -67.3 -27.6 39.0 0.339 0.0 GDU
HOH
 9.816
3.592
 N
O
 N3
O
ALA B:107 B:221 41.0 0.357 -75.4 -24.8 41.0 0.357 0.0 GDU
HOH
 9.725
4.528
 N
C
 O2
O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 ALA A:107 A:221 26.0 0.226 -74.6 145.4 26.0 0.226 0.0 HOH
 3.172
 O
 O
ALA B:107 B:221 39.0 0.339 -70.1 -38.9 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 ALA B:105 B:221 29.0 0.252 -70.8 160.7 29.0 0.252 0.0 HOH
 2.612
 O
 O
ALA D:105 D:221 32.0 0.278 -71.0 163.5 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 ALA B:105 B:221 20.0 0.174 -81.0 164.9 20.0 0.174 0.0 UDP
HOH
 9.897
2.569
 N
O
 N3
O
ALA D:105 D:221 25.0 0.217 -87.6 158.6 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 ALA B:105 B:221 18.0 0.157 -73.8 155.9 18.0 0.157 0.0 HOH
 2.749
 O
 O
ALA D:105 D:221 23.0 0.2 -87.4 163.9 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 ALA B:105 B:221 29.0 0.252 -80.0 161.9 29.0 0.252 0.0 HOH
 2.654
 O
 O
ALA D:105 D:221 28.0 0.243 -80.1 158.4 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 ALA B:105 B:221 26.0 0.226 -77.7 161.6 26.0 0.226 0.0 HOH
 2.532
 O
 O
ALA D:105 D:221 28.0 0.243 -82.3 162.0 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 ALA B:105 B:221 19.0 0.165 -77.7 153.6 19.0 0.165 0.0 UPG
HOH
 9.966
2.847
 N
O
 N3
O
ALA D:105 D:623 24.0 0.209 -78.4 156.9 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 ALA B:105 B:221 21.0 0.183 -76.0 158.7 21.0 0.183 0.0 HOH
 2.522
 O
 O
ALA D:105 D:221 23.0 0.2 -78.4 155.0 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 ALA B:105 B:221 28.0 0.243 -86.1 165.6 28.0 0.243 0.0 HOH
 2.468
 O
 O
ALA D:105 D:221 28.0 0.243 -77.1 161.6 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 ALA A:105 A:221 26.0 0.226 -75.7 163.7 26.0 0.226 0.0 MES
HOH
 3.533
2.727
 CB
O
 C8
O
ALA B:105 B:221 26.0 0.226 -78.4 156.3 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 ALA B:105 B:221 22.0 0.191 -74.9 157.9 22.0 0.191 0.0 GDU
HOH
 9.961
2.695
 N
O
 N3
O
ALA D:105 D:221 26.0 0.226 -79.9 155.8 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ALA A:105 A:221 25.0 0.217 -68.9 157.2 25.0 0.217 0.0 MES
HOH
 9.742
2.795
 O
O
 O2S
O
ALA B:105 B:221 22.0 0.191 -76.2 155.0 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ALA A:105 A:221 21.0 0.183 -79.6 166.3 21.0 0.183 0.0 HOH
 2.630
 O
 O
ALA B:105 B:221 22.0 0.191 -71.7 160.9 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ALA A:105 A:221 26.0 0.226 -76.9 158.0 26.0 0.226 0.0 MES
HOH
 6.748
2.689
 C
O
 O1
O
ALA B:105 B:221 26.0 0.226 -77.7 166.7 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 ALA B:105 B:221 22.0 0.191 -73.6 161.7 22.0 0.191 0.0 HOH
 2.786
 O
 O
ALA D:105 D:221 27.0 0.235 -77.6 157.4 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 ALA A:105 A:221 23.0 0.2 -77.0 160.4 23.0 0.2 0.0 SO4
HOH
 9.340
2.712
 O
O
 O1
O
ALA B:105 B:221 21.0 0.183 -71.6 164.1 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 ALA A:105 A:221 30.0 0.261 -74.2 155.0 30.0 0.261 0.0 HOH
 2.606
 O
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 ALA B:105 B:221 28.0 0.243 -71.8 157.5 28.0 0.243 0.0 HOH
 2.761
 O
 O
ALA D:105 D:221 23.0 0.2 -79.9 152.4 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 ALA B:105 B:221 23.0 0.2 -80.3 157.6 23.0 0.2 0.0 HOH
 2.706
 O
 O
ALA D:105 D:221 27.0 0.235 -75.5 152.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 ALA A:217 A:217 18.0 0.157 -66.9 152.9