Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33135256 . G A CCDS6535.1:NM_001497.3:c.579taC>taT_NP_001488.2:p.193Y>Y Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 TYR A:72 A:193 35.0 0.152 H -57.3 -43.8 35.0 0.152 0.0 HOH
 3.580
 HE2
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 TYR A:68 A:193 17.0 0.074 H -64.9 -42.9 17.0 0.074 0.0 HOH
 7.470
 O
 O
TYR B:68 B:193 24.0 0.104 H -65.5 -42.7 24.0 0.104 0.0 HOH
 6.443
 HD2
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 TYR B:82 C:193 11.0 0.048 H -62.1 -36.8 11.0 0.048 0.0 SO4
HOH
 6.583
7.922
 OH
CE2
 O1
O
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 TYR A:82 A:193 16.0 0.07 H -62.8 -43.6 16.0 0.07 0.0 SO4
SO4
HOH
 6.416
8.929
3.865
 OH
CE1
CE1
 O1
O2
O
TYR B:82 B:193 15.0 0.065 H -66.3 -40.2 NA NA NA
TYR C:82 C:193 15.0 0.065 H -72.2 -43.4 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 TYR A:82 A:193 19.0 0.083 H -62.5 -43.9 19.0 0.083 0.0 SO4
SO4
HOH
 6.485
8.839
4.026
 OH
CE1
CE1
 O1
O2
O
TYR B:82 B:193 11.0 0.048 H -67.9 -39.6 NA NA NA
TYR C:82 C:193 16.0 0.07 H -74.2 -41.3 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 TYR A:82 A:193 22.0 0.096 H -64.4 -38.3 22.0 0.096 0.0 SO4
SO4
HOH
 6.977
9.018
6.733
 OH
CE1
O
 O1
O2
O
TYR B:82 B:193 11.0 0.048 H -67.6 -39.1 NA NA NA
TYR C:82 C:193 16.0 0.07 H -69.5 -41.9 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 TYR A:82 A:193 19.0 0.083 H -66.1 -40.6 19.0 0.083 0.0 SO4
SO4
HOH
 6.948
8.873
6.831
 OH
CE1
O
 O1
O2
O
TYR B:82 B:193 17.0 0.074 H -66.6 -42.0 NA NA NA
TYR C:82 C:193 18.0 0.078 H -69.8 -41.9 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 TYR A:82 A:193 18.0 0.078 H -64.0 -44.1 18.0 0.078 0.0 SO4
SO4
DIO
HOH
 6.605
8.849
7.158
6.857
 OH
CE1
CE2
O
 O1
O2
C2'
O
TYR B:82 B:193 10.0 0.043 H -64.8 -41.3 NA NA NA
TYR C:82 C:193 17.0 0.074 H -70.3 -41.8 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 TYR A:82 A:193 25.0 0.109 H -66.7 -41.6 25.0 0.109 0.0 HOH
 3.301
 CE1
 O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 TYR A:82 A:193 22.0 0.096 H -65.8 -41.7 22.0 0.096 0.0 HOH
 3.391
 CE1
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 TYR A:82 A:193 25.0 0.109 H -68.5 -43.5 25.0 0.109 0.0 HOH
 3.330
 CE1
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 TYR A:82 A:193 18.0 0.078 H -64.1 -41.8 18.0 0.078 0.0 SO4
SO4
HOH
 6.336
8.749
3.835
 OH
CE1
CE1
 O4
O1
O
TYR B:82 B:193 16.0 0.07 H -69.6 -40.2 NA NA NA
TYR C:82 C:193 15.0 0.065 H -71.9 -42.9 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 TYR A:82 A:193 22.0 0.096 H -61.8 -44.6 22.0 0.096 0.0 SO4
SO4
HOH
 6.757
9.027
4.421
 OH
CE1
OH
 O2
O1
O
TYR B:82 B:193 9.0 0.039 H -62.3 -41.3 NA NA NA
TYR C:82 C:193 13.0 0.057 H -68.1 -43.4 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 TYR A:82 A:193 15.0 0.065 H -58.2 -44.7 15.0 0.065 0.0 SO4
SO4
HOH
 6.327
6.958
3.739
 OH
CE2
CE1
 O1
O4
O
TYR B:82 B:193 11.0 0.048 H -60.2 -41.4 NA NA NA
TYR C:82 C:193 14.0 0.061 H -65.4 -45.0 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 TYR A:82 A:193 16.0 0.07 H -63.4 -43.5 16.0 0.07 0.0 SO4
HOH
 6.494
2.948
 OH
OH
 O3
O
TYR B:82 B:193 10.0 0.043 H -66.7 -42.9 NA NA NA
TYR C:82 C:193 13.0 0.057 H -73.0 -38.9 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 TYR A:82 A:193 16.0 0.07 H -60.7 -46.8 16.0 0.07 0.0 SO4
SO4
HOH
 6.305
8.996
3.288
 OH
CE1
CE1
 O3
O1
O
TYR B:82 B:193 10.0 0.043 H -64.3 -42.2 NA NA NA
TYR C:82 C:193 16.0 0.07 H -71.7 -39.0 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 TYR A:82 A:193 16.0 0.07 H -63.8 -41.6 16.0 0.07 0.0 SO4
HOH
 6.397
4.353
 OH
OH
 O3
O
TYR B:82 B:193 8.0 0.035 H -60.7 -42.5 NA NA NA
TYR C:82 C:193 14.0 0.061 H -73.0 -38.6 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 TYR A:82 A:193 15.0 0.065 H -59.7 -43.0 15.0 0.065 0.0 SO4
HOH
 6.338
3.964
 OH
CE1
 O2
O
TYR B:82 B:193 8.0 0.035 H -64.3 -41.5 NA NA NA
TYR C:82 C:193 17.0 0.074 H -66.6 -39.9 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 TYR A:82 A:193 16.0 0.07 H -60.0 -45.2 16.0 0.07 0.0 SO4
HOH
 6.306
2.689
 OH
OH
 O2
O
TYR B:82 B:193 8.0 0.035 H -69.2 -43.7 NA NA NA
TYR C:82 C:193 18.0 0.078 H -66.6 -39.0 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 TYR A:83 A:197 5.0 0.022 H -64.3 -41.2 5.0 0.022 0.0 HOH
 7.904
 O
 O
TYR B:83 B:197 6.0 0.026 H -72.0 -35.9 6.0 0.026 0.0 HOH
 8.907
 O
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 TYR A:83 A:197 18.0 0.078 H -65.4 -32.8 18.0 0.078 0.0 HOH
 7.629
 O
 O
TYR B:83 B:197 4.0 0.017 H -69.9 -30.5 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 TYR B:81 B:197 16.0 0.07 H -68.3 -39.3 16.0 0.07 0.0 HOH
 3.747
 CE1
 O
TYR D:81 D:197 20.0 0.087 H -64.9 -39.2 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 TYR B:81 B:197 20.0 0.087 H -64.6 -44.1 20.0 0.087 0.0 HOH
 7.002
 CE2
 O
TYR D:81 D:197 24.0 0.104 H -65.0 -40.2 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 TYR B:81 B:197 24.0 0.104 H -60.4 -45.9 24.0 0.104 0.0 HOH
 5.275
 CE1
 O
TYR D:81 D:197 30.0 0.13 H -69.8 -42.1 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 TYR B:81 B:197 24.0 0.104 H -62.2 -44.1 24.0 0.104 0.0 HOH
 3.451
 CE1
 O
TYR D:81 D:197 23.0 0.1 H -61.8 -38.2 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 TYR B:81 B:197 26.0 0.113 H -60.4 -46.4 26.0 0.113 0.0 HOH
 2.766
 OH
 O
TYR D:81 D:197 22.0 0.096 H -53.0 -42.9 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 TYR B:81 B:197 28.0 0.122 H -64.0 -42.4 28.0 0.122 0.0 HOH
 7.384
 O
 O
TYR D:81 D:599 23.0 0.1 H -69.4 -37.2 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 TYR B:81 B:197 29.0 0.126 H -62.5 -44.5 29.0 0.126 0.0 HOH
 4.240
 CE2
 O
TYR D:81 D:197 27.0 0.117 H -71.8 -35.5 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 TYR B:81 B:197 25.0 0.109 H -60.5 -44.4 25.0 0.109 0.0 HOH
 4.538
 CE1
 O
TYR D:81 D:197 20.0 0.087 H -65.6 -38.3 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 TYR A:81 A:197 30.0 0.13 H -68.7 -38.9 30.0 0.13 0.0 HOH
 2.928
 CE1
 O
TYR B:81 B:197 18.0 0.078 H -57.9 -48.6 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 TYR B:81 B:197 27.0 0.117 H -63.0 -38.4 27.0 0.117 0.0 HOH
 5.980
 CE1
 O
TYR D:81 D:197 20.0 0.087 H -66.7 -41.8 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 TYR A:81 A:197 23.0 0.1 H -61.9 -45.8 23.0 0.1 0.0 SO4
HOH
 9.316
2.788
 CE1
OH
 O2
O
TYR B:81 B:197 29.0 0.126 H -65.6 -41.3 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 TYR A:81 A:197 18.0 0.078 H -59.9 -41.1 18.0 0.078 0.0 SO4
HOH
 9.486
3.079
 CE1
CE1
 O4
O
TYR B:81 B:197 30.0 0.13 H -65.7 -42.7 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 TYR A:81 A:197 28.0 0.122 H -62.5 -39.6 28.0 0.122 0.0 SO4
HOH
 8.882
3.345
 CE1
CE1
 O4
O
TYR B:81 B:197 29.0 0.126 H -65.4 -39.9 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 TYR B:81 B:197 22.0 0.096 H -65.0 -38.8 22.0 0.096 0.0 HOH
 5.347
 CE2
 O
TYR D:81 D:197 23.0 0.1 H -64.0 -40.3 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 TYR A:81 A:197 27.0 0.117 H -71.7 -35.8 27.0 0.117 0.0 HOH
 7.387
 O
 O
TYR B:81 B:197 27.0 0.117 H -66.4 -35.1 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 TYR A:81 A:197 26.0 0.113 H -65.5 -37.4 26.0 0.113 0.0 HOH
 2.901
 OH
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 TYR B:81 B:197 26.0 0.113 H -65.7 -42.1 26.0 0.113 0.0 HOH
 4.288
 CE2
 O
TYR D:81 D:197 23.0 0.1 H -65.0 -44.9 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 TYR B:81 B:197 32.0 0.139 H -65.9 -35.5 32.0 0.139 0.0 HOH
 7.334
 CD1
 O
TYR D:81 D:197 20.0 0.087 H -65.1 -41.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 TYR A:193 A:193 32.0 0.139 H -60.3 -40.6