Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33135282 . G A CCDS6535.1:NM_001497.3:c.553Cgc>Tgc_NP_001488.2:p.185R>C Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ARG A:64 A:185 69.0 0.307 S -162.7 122.8 69.0 0.307 0.0 HOH
 2.300
 H
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ARG A:60 A:185 48.0 0.213 S -173.5 114.8 48.0 0.213 0.0 HOH
 1.976
 HH11
 O
ARG B:60 B:185 66.0 0.293 S -173.5 114.3 66.0 0.293 0.0 HOH
 2.805
 HA
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 ARG B:74 C:185 27.0 0.12 S -161.1 112.9 27.0 0.12 0.0 HOH
 6.069
 NH2
 O
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ARG A:74 A:185 37.0 0.164 S -174.8 116.2 37.0 0.164 0.0 SO4
UDH
HOH
 9.913
2.758
2.967
 O
O
NE
 O4
N3
O
ARG B:74 B:185 27.0 0.12 S -172.4 123.9 NA NA NA
ARG C:74 C:185 35.0 0.156 S -179.1 117.1 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ARG A:74 A:185 37.0 0.164 S -174.7 119.2 37.0 0.164 0.0 SO4
UDH
GOL
HOH
 9.782
2.763
5.903
2.936
 O
O
NH2
NH2
 O1
N3
O3
O
ARG B:74 B:185 26.0 0.116 S -169.8 121.0 NA NA NA
ARG C:74 C:185 39.0 0.173 S -179.4 115.3 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ARG A:74 A:185 37.0 0.164 S -175.4 119.3 37.0 0.164 0.0 SO4
UDH
GOL
HOH
 9.980
2.736
5.623
2.876
 O
O
NH2
NH1
 O4
N3
O1
O
ARG B:74 B:185 25.0 0.111 S -166.8 124.3 NA NA NA
ARG C:74 C:185 37.0 0.164 S 179.2 116.9 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ARG A:74 A:185 35.0 0.156 S -171.8 120.5 35.0 0.156 0.0 SO4
UDH
GOL
HOH
 9.632
2.752
5.803
2.984
 O
O
NH2
NE
 O1
N3
O3
O
ARG B:74 B:185 27.0 0.12 S -167.7 121.8 NA NA NA
ARG C:74 C:185 39.0 0.173 S 179.5 118.1 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ARG A:74 A:185 34.0 0.151 S -171.5 120.1 34.0 0.151 0.0 UDH
SO4
HOH
 2.804
9.926
3.007
 O
O
NE
 N3
O4
O
ARG B:74 B:185 26.0 0.116 S -167.8 121.8 NA NA NA
ARG C:74 C:185 41.0 0.182 S -179.6 116.9 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ARG A:74 A:185 59.0 0.262 S -171.0 112.5 59.0 0.262 0.0 HOH
 3.078
 NH1
 O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ARG A:74 A:185 60.0 0.267 S -173.0 112.3 60.0 0.267 0.0 HOH
 2.881
 N
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ARG A:74 A:185 64.0 0.284 S -168.6 114.6 64.0 0.284 0.0 UDP
HOH
 2.879
2.858
 O
NE
 N3
O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 ARG A:74 A:185 38.0 0.169 S -173.5 121.1 38.0 0.169 0.0 UDH
SO4
GOL
HOH
 2.817
9.982
5.889
2.819
 O
O
NH2
NH1
 N3
O4
C3
O
ARG B:74 B:185 27.0 0.12 S -171.3 122.1 NA NA NA
ARG C:74 C:185 34.0 0.151 S -177.0 116.6 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:74 A:185 37.0 0.164 S -165.1 127.5 37.0 0.164 0.0 UDH
HOH
 2.804
2.708
 N
NH1
 O2
O
ARG B:74 B:185 30.0 0.133 S -160.1 133.4 NA NA NA
ARG C:74 C:185 41.0 0.182 S -159.2 119.5 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:74 A:185 38.0 0.169 S -152.6 127.5 38.0 0.169 0.0 UDP
HOH
 2.834
3.040
 N
NH2
 O2
O
ARG B:74 B:185 27.0 0.12 S -163.2 123.8 NA NA NA
ARG C:74 C:185 45.0 0.2 S -161.5 126.8 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:74 A:185 44.0 0.196 S -162.8 126.7 44.0 0.196 0.0 UDP
HOH
 2.789
2.696
 O
NH1
 N3
O
ARG B:74 B:185 28.0 0.124 S -158.7 129.3 NA NA NA
ARG C:74 C:185 35.0 0.156 S -161.7 130.5 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:74 A:185 40.0 0.178 S -156.1 126.4 40.0 0.178 0.0 UDP
SO4
HOH
 2.779
9.790
2.917
 N
O
NH1
 O2
O2
O
ARG B:74 B:185 26.0 0.116 S -163.2 127.9 NA NA NA
ARG C:74 C:185 45.0 0.2 S -162.2 127.0 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:74 A:185 38.0 0.169 S -156.3 127.8 38.0 0.169 0.0 UDP
HOH
 2.725
2.742
 N
NH1
 O2
O
ARG B:74 B:185 28.0 0.124 S -161.1 129.2 NA NA NA
ARG C:74 C:185 41.0 0.182 S -163.2 125.3 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:74 A:185 37.0 0.164 S -158.9 124.0 37.0 0.164 0.0 UDP
HOH
 2.796
2.783
 N
NH1
 O2
O
ARG B:74 B:185 27.0 0.12 S -163.3 128.6 NA NA NA
ARG C:74 C:185 33.0 0.147 S -159.7 132.2 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:74 A:185 40.0 0.178 S -154.7 125.6 40.0 0.178 0.0 UDP
HOH
 2.695
2.796
 O
NH1
 N3
O
ARG B:74 B:185 27.0 0.12 S -162.2 127.5 NA NA NA
ARG C:74 C:185 40.0 0.178 S -159.0 127.3 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 ARG A:75 A:189 57.0 0.253 S 179.4 103.7 57.0 0.253 0.0 GDU
HOH
 2.661
3.716
 O
CA
 N3
O
ARG B:75 B:189 58.0 0.258 S -174.7 109.9 51.0 0.227 0.031 A:P08037:0.031
 GDU
HOH
 2.626
3.084
 N
NH2
 O2
O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 ARG A:75 A:189 62.0 0.276 S -173.0 107.7 62.0 0.276 0.0 HOH
 3.123
 NH1
 O
ARG B:75 B:189 65.0 0.289 S -172.0 111.2 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 ARG B:73 B:189 14.0 0.062 S -164.9 110.2 14.0 0.062 0.0 HOH
 2.952
 NH2
 O
ARG D:73 D:189 27.0 0.12 S -159.5 110.5 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 ARG B:73 B:189 24.0 0.107 S -176.5 120.7 24.0 0.107 0.0 UDP
HOH
 2.929
3.610
 O
NE
 N3
O
ARG D:73 D:189 40.0 0.178 S -173.3 116.2 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 ARG B:73 B:189 18.0 0.08 S -173.8 117.5 18.0 0.08 0.0 UDP
UDP
HOH
 2.807
9.697
2.604
 O
C
NE
 N3
O3B
O
ARG D:73 D:189 25.0 0.111 S 176.0 112.0 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 ARG B:73 B:189 14.0 0.062 S -166.4 110.1 14.0 0.062 0.0 HOH
 2.700
 NH2
 O
ARG D:73 D:189 23.0 0.102 S -170.0 107.9 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 ARG B:73 B:189 20.0 0.089 S -173.0 103.9 20.0 0.089 0.0 HOH
 2.627
 NE
 O
ARG D:73 D:189 27.0 0.12 S -174.3 105.3 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 ARG B:73 B:189 20.0 0.089 S -175.9 111.4 20.0 0.089 0.0 UPG
UDP
HOH
 2.698
9.207
2.756
 O
C
NE
 N3
O1A
O
ARG D:73 D:591 23.0 0.102 S -176.6 118.4 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 ARG B:73 B:189 29.0 0.129 S -169.9 114.7 29.0 0.129 0.0 UD2
HOH
 2.708
2.792
 O
NH1
 N3
O
ARG D:73 D:189 27.0 0.12 S -176.0 120.1 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 ARG B:73 B:189 14.0 0.062 S -159.6 108.5 14.0 0.062 0.0 HOH
 2.638
 N
 O
ARG D:73 D:189 24.0 0.107 S -164.8 114.8 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 ARG A:73 A:189 34.0 0.151 S -177.4 111.2 34.0 0.151 0.0 GDU
MES
HOH
 2.759
5.967
2.849
 O
NE
CD
 N3
O2S
O
ARG B:73 B:189 42.0 0.187 S -168.4 118.4 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 ARG B:73 B:189 23.0 0.102 S -171.1 115.6 23.0 0.102 0.0 GDU
UDP
HOH
 2.768
9.555
2.729
 O
C
CD
 N3
O1A
O
ARG D:73 D:189 33.0 0.147 S -171.1 120.9 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ARG A:73 A:189 35.0 0.156 S -170.0 116.8 35.0 0.156 0.0 GDU
SO4
HOH
 2.830
9.321
2.925
 O
O
NH2
 N3
O1
O
ARG B:73 B:189 39.0 0.173 S -173.1 117.0 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ARG A:73 A:189 35.0 0.156 S -166.8 112.1 35.0 0.156 0.0 GDU
HOH
 2.961
2.927
 N
NE
 O2
O
ARG B:73 B:189 23.0 0.102 S -174.7 117.2 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ARG A:73 A:189 25.0 0.111 S 178.0 118.8 25.0 0.111 0.0 UDH
MES
HOH
 2.908
3.495
2.992
 O
NE
NH2
 N3
O1
O
ARG B:73 B:189 24.0 0.107 S -176.3 122.7 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 ARG B:73 B:189 23.0 0.102 S -173.0 117.7 23.0 0.102 0.0 GDU
UDP
HOH
 2.786
8.445
2.918
 O
C
CD
 N3
O3B
O
ARG D:73 D:189 31.0 0.138 S -169.6 114.8 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 ARG A:73 A:189 33.0 0.147 S -165.5 120.5 33.0 0.147 0.0 UDH
SO4
HOH
 2.872
7.350
3.137
 O
NH2
NH1
 N3
O3
O
ARG B:73 B:189 41.0 0.182 S -166.6 115.2 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 ARG A:73 A:189 53.0 0.236 S -164.9 114.0 53.0 0.236 0.0 HOH
 3.046
 N
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 ARG B:73 B:189 40.0 0.178 S -174.0 113.2 40.0 0.178 0.0 UDP
HOH
 2.814
2.781
 O
NH1
 N3
O
ARG D:73 D:189 31.0 0.138 S -179.5 115.2 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 ARG B:73 B:189 28.0 0.124 S -174.3 114.7 28.0 0.124 0.0 UDP
HOH
 2.755
2.801
 O
NH2
 N3
O
ARG D:73 D:189 41.0 0.182 S -170.3 118.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 ARG A:185 A:185 43.0 0.191 S -162.4 127.8