Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33135314 . G A CCDS6535.1:NM_001497.3:c.521tCt>tTt_NP_001488.2:p.174S>F Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
2018-10-10 SER A:53 A:174 10.0 0.087 -72.9 137.2 10.0 0.087 0.0 HOH
2.008
HG
O
6fwu 1 P15291 100.0 0.0 X-RAY
2018-10-10 SER A:49 A:174 12.0 0.104 -92.0 138.9 12.0 0.104 0.0
SER B:49 B:174 3.0 0.026 -93.0 137.5 3.0 0.026 0.0 HOH
5.950
HG
O
4l41 2 P15291 99.27 0.0 X-RAY
2013-10-02 SER B:63 C:174 9.0 0.078 -99.9 139.2 9.0 0.078 0.0
2ae7 1 P15291 98.9 0.0 X-RAY
2005-10-04 SER A:63 A:174 8.0 0.07 -81.4 138.3 8.0 0.07 0.0 SO4
HOH
9.859
2.818
N
O
O4
O
SER B:63 B:174 9.0 0.078 -90.1 135.3 NA NA NA
SER C:63 C:174 11.0 0.096 -85.0 143.8 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
2005-10-04 SER A:63 A:174 9.0 0.078 -82.0 137.2 9.0 0.078 0.0 SO4
HOH
9.926
2.809
CB
N
O4
O
SER B:63 B:174 11.0 0.096 -90.4 135.4 NA NA NA
SER C:63 C:174 10.0 0.087 -87.0 140.1 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
2005-10-04 SER A:63 A:174 9.0 0.078 -84.6 136.6 9.0 0.078 0.0 SO4
HOH
9.824
2.865
CB
N
O4
O
SER B:63 B:174 12.0 0.104 -81.5 136.3 NA NA NA
SER C:63 C:174 9.0 0.078 -88.0 137.4 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
2005-10-04 SER A:63 A:174 9.0 0.078 -85.9 136.4 9.0 0.078 0.0 SO4
HOH
9.837
2.758
CB
N
O4
O
SER B:63 B:174 11.0 0.096 -86.1 135.0 NA NA NA
SER C:63 C:174 10.0 0.087 -90.3 137.9 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
2005-10-04 SER A:63 A:174 10.0 0.087 -85.4 137.0 10.0 0.087 0.0 SO4
HOH
9.966
2.816
N
O
O4
O
SER B:63 B:174 10.0 0.087 -89.9 134.5 NA NA NA
SER C:63 C:174 10.0 0.087 -89.3 140.0 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
2006-03-14 SER A:63 A:174 8.0 0.07 -88.9 138.8 8.0 0.07 0.0 PGE
HOH
6.931
2.693
C
OG
C3
O
2fya 1 P15291 98.9 0.0 X-RAY
2006-03-14 SER A:63 A:174 9.0 0.078 -89.3 137.8 9.0 0.078 0.0 PGE
HOH
6.849
2.753
C
N
C3
O
2fyb 1 P15291 98.9 0.0 X-RAY
2006-03-14 SER A:63 A:174 7.0 0.061 -87.8 137.9 7.0 0.061 0.0 HOH
2.727
OG
O
3ee5 1 P15291 98.9 0.0 X-RAY
2009-01-06 SER A:63 A:174 8.0 0.07 -77.9 138.0 8.0 0.07 0.0 SO4
HOH
9.948
2.861
N
OG
O3
O
SER B:63 B:174 12.0 0.104 -92.4 138.0 NA NA NA
SER C:63 C:174 9.0 0.078 -90.7 139.1 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
2012-07-04 SER A:63 A:174 8.0 0.07 -76.3 140.0 8.0 0.07 0.0 SO4
HOH
9.770
2.862
N
O
O4
O
SER B:63 B:174 11.0 0.096 -91.6 136.6 NA NA NA
SER C:63 C:174 9.0 0.078 -78.7 140.6 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
2012-07-04 SER A:63 A:174 7.0 0.061 -79.6 134.8 7.0 0.061 0.0 SO4
HOH
9.654
2.757
N
O
O4
O
SER B:63 B:174 10.0 0.087 -81.3 136.0 NA NA NA
SER C:63 C:174 9.0 0.078 -81.5 138.2 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
2012-07-04 SER A:63 A:174 6.0 0.052 -70.4 129.7 6.0 0.052 0.0 SO4
HOH
9.685
2.767
N
N
O4
O
SER B:63 B:174 10.0 0.087 -90.8 137.9 NA NA NA
SER C:63 C:174 10.0 0.087 -88.2 138.7 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
2012-07-04 SER A:63 A:174 7.0 0.061 -74.1 133.5 7.0 0.061 0.0 SO4
HOH
9.723
2.682
N
OG
O2
O
SER B:63 B:174 10.0 0.087 -86.5 135.6 NA NA NA
SER C:63 C:174 9.0 0.078 -87.1 138.7 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
2012-07-04 SER A:63 A:174 7.0 0.061 -75.7 137.2 7.0 0.061 0.0 SO4
HOH
9.614
2.772
N
N
O2
O
SER B:63 B:174 10.0 0.087 -80.0 137.1 NA NA NA
SER C:63 C:174 9.0 0.078 -79.0 137.4 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
2012-07-04 SER A:63 A:174 6.0 0.052 -80.3 133.5 6.0 0.052 0.0 SO4
HOH
9.750
2.802
N
OG
O4
O
SER B:63 B:174 10.0 0.087 -83.9 135.8 NA NA NA
SER C:63 C:174 9.0 0.078 -81.2 140.9 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
2012-07-04 SER A:63 A:174 6.0 0.052 -71.0 135.0 6.0 0.052 0.0 SO4
HOH
9.387
2.790
N
N
O4
O
SER B:63 B:174 9.0 0.078 -85.6 133.0 NA NA NA
SER C:63 C:174 9.0 0.078 -72.9 138.4 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
2000-09-20 SER A:64 A:178 13.0 0.113 -83.7 135.2 13.0 0.113 0.0 HOH
5.629
OG
O
SER B:64 B:178 13.0 0.113 -83.3 133.5 13.0 0.113 0.0 HOH
2.660
O
O
1fgx 1 P08037 88.89 0.0 X-RAY
2000-08-16 SER A:64 A:178 10.0 0.087 -88.5 135.3 10.0 0.087 0.0
SER B:64 B:178 11.0 0.096 -87.8 135.7 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
2002-12-25 SER B:62 B:178 10.0 0.087 -94.6 134.5 10.0 0.087 0.0 PG4
HOH
7.116
2.731
C
N
C6
O
SER D:62 D:178 10.0 0.087 -91.3 130.2 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
2003-01-07 SER B:62 B:178 12.0 0.104 -76.9 142.9 12.0 0.104 0.0 HOH
3.032
N
O
SER D:62 D:178 9.0 0.078 -97.2 133.0 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
2003-01-14 SER B:62 B:178 10.0 0.087 -92.3 144.9 10.0 0.087 0.0 HOH
2.851
N
O
SER D:62 D:178 7.0 0.061 -98.7 136.5 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
2003-02-04 SER B:62 B:178 9.0 0.078 -85.2 130.1 9.0 0.078 0.0 HOH
2.684
N
O
SER D:62 D:178 11.0 0.096 -90.2 136.8 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
2003-02-18 SER B:62 B:178 11.0 0.096 -86.5 132.5 11.0 0.096 0.0 HOH
2.522
OG
O
SER D:62 D:178 16.0 0.139 -80.4 152.5 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
2003-02-25 SER B:62 B:178 9.0 0.078 -67.7 140.3 9.0 0.078 0.0 HOH
2.865
N
O
SER D:62 D:580 12.0 0.104 -98.0 135.4 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
2003-03-18 SER B:62 B:178 13.0 0.113 -89.4 139.6 13.0 0.113 0.0 PG4
HOH
7.636
2.891
C
N
C3
O
SER D:62 D:178 10.0 0.087 -86.2 136.2 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
2003-01-21 SER B:62 B:178 12.0 0.104 -90.1 133.5 12.0 0.104 0.0 HOH
2.797
N
O
SER D:62 D:178 9.0 0.078 -88.8 134.9 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
2003-03-04 SER A:62 A:178 12.0 0.104 -87.3 140.9 12.0 0.104 0.0 HOH
2.951
O
O
SER B:62 B:178 8.0 0.07 -88.5 124.6 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
2005-03-22 SER B:62 B:178 11.0 0.096 -88.5 138.0 11.0 0.096 0.0 HOH
2.725
O
O
SER D:62 D:178 9.0 0.078 -89.1 131.6 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
2004-12-14 SER A:62 A:178 9.0 0.078 -77.6 135.7 9.0 0.078 0.0 HOH
2.736
O
O
SER B:62 B:178 13.0 0.113 -88.6 130.4 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
2004-12-14 SER A:62 A:178 12.0 0.104 -90.7 130.2 12.0 0.104 0.0 HOH
2.593
N
O
SER B:62 B:178 14.0 0.122 -87.1 135.9 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
2004-12-14 SER A:62 A:178 12.0 0.104 -97.2 133.1 12.0 0.104 0.0 HOH
2.688
N
O
SER B:62 B:178 9.0 0.078 -87.4 132.5 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
2006-03-14 SER B:62 B:178 10.0 0.087 -92.2 135.9 10.0 0.087 0.0 HOH
2.679
O
O
SER D:62 D:178 9.0 0.078 -91.0 135.9 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
2013-08-28 SER A:62 A:178 10.0 0.087 -77.6 124.7 10.0 0.087 0.0 SO4
HOH
8.431
3.631
CB
OG
O1
O
SER B:62 B:178 11.0 0.096 -71.3 127.9 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
2003-09-16 SER A:62 A:178 15.0 0.13 -88.7 133.4 15.0 0.13 0.0 HOH
2.809
O
O
1pzy 2 P08037 89.74 0.0 X-RAY
2003-09-02 SER B:62 B:178 9.0 0.078 -93.7 132.7 9.0 0.078 0.0 HOH
3.810
C
O
SER D:62 D:178 11.0 0.096 -84.8 140.0 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
2006-03-14 SER B:62 B:178 9.0 0.078 -93.8 136.9 9.0 0.078 0.0 HOH
2.972
O
O
SER D:62 D:178 10.0 0.087 -94.1 134.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 SER A:174 A:174 12.0 0.104 -74.0 131.5