Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33135322 . G A CCDS6535.1:NM_001497.3:c.513gaC>gaT_NP_001488.2:p.171D>D Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ASP A:50 A:171 127.0 0.847 S -84.6 -12.5 127.0 0.847 0.0 HOH
 4.421
 HB2
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ASP A:46 A:171 135.0 0.9 S -99.5 -14.1 135.0 0.9 0.0
ASP B:46 B:171 133.0 0.887 S -101.3 -12.6 133.0 0.887 0.0 HOH
 6.072
 H
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 ASP B:60 C:171 122.0 0.813 S -85.7 -33.2 122.0 0.813 0.0
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASP A:60 A:171 118.0 0.787 S -91.8 -13.4 118.0 0.787 0.0 SO4
HOH
 4.242
2.355
 OD2
OD2
 O4
O
ASP B:60 B:171 126.0 0.84 S -96.7 -5.0 NA NA NA
ASP C:60 C:171 127.0 0.847 S -91.4 -10.6 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASP A:60 A:171 125.0 0.833 S -99.3 -12.5 125.0 0.833 0.0 SO4
HOH
 4.167
2.646
 OD2
OD2
 O4
O
ASP B:60 B:171 125.0 0.833 S -96.5 -8.9 NA NA NA
ASP C:60 C:171 130.0 0.867 S -88.3 -13.4 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASP A:60 A:171 125.0 0.833 S -100.2 -13.0 125.0 0.833 0.0 SO4
HOH
 4.231
2.678
 OD2
OD1
 O4
O
ASP B:60 B:171 127.0 0.847 S -98.9 -7.1 NA NA NA
ASP C:60 C:171 131.0 0.873 S -92.3 -11.8 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASP A:60 A:171 126.0 0.84 S -96.9 -12.2 126.0 0.84 0.0 SO4
HOH
 4.292
2.609
 OD2
OD2
 O4
O
ASP B:60 B:171 126.0 0.84 S -99.3 -4.3 NA NA NA
ASP C:60 C:171 124.0 0.827 S -95.4 -10.3 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASP A:60 A:171 125.0 0.833 S -96.2 -15.5 125.0 0.833 0.0 SO4
HOH
 4.201
2.706
 OD2
O
 O4
O
ASP B:60 B:171 127.0 0.847 S -99.9 -6.5 NA NA NA
ASP C:60 C:171 130.0 0.867 S -94.4 -9.5 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASP A:60 A:171 133.0 0.887 S -98.8 -5.3 133.0 0.887 0.0 PGE
HOH
 5.430
2.673
 OD2
O
 O1
O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASP A:60 A:171 130.0 0.867 S -98.4 -1.8 130.0 0.867 0.0 HOH
 2.472
 N
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASP A:60 A:171 131.0 0.873 S -101.3 0.5 131.0 0.873 0.0 HOH
 2.573
 N
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 ASP A:60 A:171 123.0 0.82 S -99.3 -10.9 123.0 0.82 0.0 SO4
HOH
 3.943
2.587
 OD2
OD2
 O3
O
ASP B:60 B:171 127.0 0.847 S -94.6 -7.0 NA NA NA
ASP C:60 C:171 126.0 0.84 S -99.5 -8.0 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:60 A:171 128.0 0.853 S -104.4 -16.5 128.0 0.853 0.0 SO4
HOH
 3.849
2.554
 OD2
OD1
 O4
O
ASP B:60 B:171 125.0 0.833 S -95.3 -7.7 NA NA NA
ASP C:60 C:171 132.0 0.88 S -98.1 -4.6 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:60 A:171 123.0 0.82 S -98.4 -8.2 123.0 0.82 0.0 SO4
HOH
 3.984
2.701
 N
O
 O4
O
ASP B:60 B:171 124.0 0.827 S -94.8 -8.2 NA NA NA
ASP C:60 C:171 124.0 0.827 S -99.6 -8.8 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:60 A:171 124.0 0.827 S -104.9 -5.9 124.0 0.827 0.0 SO4
HOH
 3.999
2.860
 OD2
OD2
 O4
O
ASP B:60 B:171 122.0 0.813 S -91.2 -5.3 NA NA NA
ASP C:60 C:171 126.0 0.84 S -101.7 -2.6 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:60 A:171 120.0 0.8 S -102.9 -6.1 120.0 0.8 0.0 SO4
HOH
 4.119
2.645
 N
O
 O2
O
ASP B:60 B:171 120.0 0.8 S -96.3 -6.1 NA NA NA
ASP C:60 C:171 128.0 0.853 S -102.8 -6.4 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:60 A:171 123.0 0.82 S -102.0 -10.3 123.0 0.82 0.0 SO4
HOH
 4.109
2.559
 OD2
OD2
 O1
O
ASP B:60 B:171 124.0 0.827 S -96.6 -7.7 NA NA NA
ASP C:60 C:171 128.0 0.853 S -99.2 -2.9 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:60 A:171 123.0 0.82 S -100.7 -10.9 123.0 0.82 0.0 SO4
HOH
 3.943
2.652
 OD2
O
 O4
O
ASP B:60 B:171 122.0 0.813 S -90.2 -6.8 NA NA NA
ASP C:60 C:171 123.0 0.82 S -98.9 -6.2 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASP A:60 A:171 129.0 0.86 S -96.0 -14.0 129.0 0.86 0.0 SO4
HOH
 3.711
3.010
 OD2
OD1
 O1
O
ASP B:60 B:171 124.0 0.827 S -102.2 -9.6 NA NA NA
ASP C:60 C:171 123.0 0.82 S -99.4 -6.8 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 ASP A:61 A:175 103.0 0.687 S -115.5 -69.6 103.0 0.687 0.0 HOH
 9.571
 OD1
 O
ASP B:61 B:175 99.0 0.66 S -112.3 -65.1 99.0 0.66 0.0 HOH
 4.187
 OD1
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 ASP A:61 A:175 108.0 0.72 S -70.8 -7.6 108.0 0.72 0.0
ASP B:61 B:175 105.0 0.7 S -72.0 -11.3 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 ASP B:59 B:175 117.0 0.78 S -73.8 -37.5 117.0 0.78 0.0 HOH
 2.692
 O
 O
ASP D:59 D:175 124.0 0.827 S -101.4 -16.3 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 ASP B:59 B:175 124.0 0.827 S -75.1 -76.2 124.0 0.827 0.0 HOH
 7.506
 C
 O
ASP D:59 D:175 100.0 0.667 S -91.0 -90.3 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 ASP B:59 B:175 117.0 0.78 S -56.5 -48.9 117.0 0.78 0.0 HOH
 2.772
 N
 O
ASP D:59 D:175 100.0 0.667 S -74.3 -72.1 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 ASP B:59 B:175 126.0 0.84 S -83.7 -38.9 126.0 0.84 0.0 HOH
 3.344
 CB
 O
ASP D:59 D:175 129.0 0.86 S -116.5 -21.3 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 ASP B:59 B:175 133.0 0.887 S -75.7 -44.9 133.0 0.887 0.0 HOH
 3.028
 N
 O
ASP D:59 D:175 122.0 0.813 S -97.5 -11.2 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 ASP B:59 B:175 132.0 0.88 S -83.1 -54.0 132.0 0.88 0.0 HOH
 3.516
 OD1
 O
ASP D:59 D:577 102.0 0.68 S -118.4 -38.8 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 ASP B:59 B:175 118.0 0.787 S -57.8 -36.6 118.0 0.787 0.0 HOH
 2.969
 OD1
 O
ASP D:59 D:175 121.0 0.807 S -80.2 -39.6 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 ASP B:59 B:175 131.0 0.873 S -76.5 -28.3 131.0 0.873 0.0 HOH
 2.701
 OD1
 O
ASP D:59 D:175 111.0 0.74 S -91.5 -33.9 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 ASP A:59 A:175 117.0 0.78 S -89.5 -10.3 117.0 0.78 0.0 HOH
 2.455
 OD2
 O
ASP B:59 B:175 125.0 0.833 S -81.8 -26.9 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 ASP B:59 B:175 123.0 0.82 S -77.4 -37.9 123.0 0.82 0.0 HOH
 2.885
 O
 O
ASP D:59 D:175 130.0 0.867 S -91.8 -23.7 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ASP A:59 A:175 137.0 0.913 S -79.2 -19.7 137.0 0.913 0.0 HOH
 3.111
 OD2
 O
ASP B:59 B:175 120.0 0.8 S -99.3 -5.7 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ASP A:59 A:175 110.0 0.733 S -118.9 11.1 110.0 0.733 0.0 HOH
 2.704
 OD2
 O
ASP B:59 B:175 72.0 0.48 S -58.1 -46.9 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ASP A:59 A:175 102.0 0.68 S -112.3 1.6 102.0 0.68 0.0 HOH
 2.906
 OD2
 O
ASP B:59 B:175 120.0 0.8 S -88.0 -26.5 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 ASP B:59 B:175 117.0 0.78 S -73.0 -47.3 117.0 0.78 0.0 HOH
 3.123
 OD1
 O
ASP D:59 D:175 122.0 0.813 S -91.1 -19.6 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 ASP A:59 A:175 129.0 0.86 S -106.3 5.9 129.0 0.86 0.0 SO4
HOH
 3.032
8.880
 N
OD2
 O2
O
ASP B:59 B:175 90.0 0.6 S -115.6 -19.3 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 ASP A:59 A:175 114.0 0.76 S -102.1 9.0 114.0 0.76 0.0 HOH
 2.583
 OD2
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 ASP B:59 B:175 130.0 0.867 S -60.2 -84.5 130.0 0.867 0.0 HOH
 2.601
 OD2
 O
ASP D:59 D:175 101.0 0.673 S -49.1 -45.0 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 ASP B:59 B:175 120.0 0.8 S -76.9 -44.2 120.0 0.8 0.0 HOH
 2.993
 OD1
 O
ASP D:59 D:175 133.0 0.887 S -87.4 -28.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 ASP A:171 A:171 131.0 0.873 S -105.3 -4.0