Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33135339 . G A CCDS6535.1:NM_001497.3:c.496Cgc>Tgc_NP_001488.2:p.166R>C Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ARG A:45 A:166 57.0 0.253 E -109.6 137.1 57.0 0.253 0.0 HOH
 2.733
 HG2
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ARG A:41 A:166 59.0 0.262 E -109.7 138.4 59.0 0.262 0.0 NO3
HOH
 1.730
3.443
 HH11
HG2
 O3
O
ARG B:41 B:166 54.0 0.24 E -111.2 137.9 54.0 0.24 0.0 NO3
HOH
 2.306
4.638
 HE
O
 O2
O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 ARG B:55 C:166 46.0 0.204 E -110.3 128.5 46.0 0.204 0.0
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ARG A:55 A:166 64.0 0.284 E -107.0 141.5 64.0 0.284 0.0 SO4
HOH
 8.967
2.541
 O
NH1
 O2
O
ARG B:55 B:166 56.0 0.249 E -108.2 140.2 NA NA NA
ARG C:55 C:166 54.0 0.24 E -111.8 142.1 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ARG A:55 A:166 58.0 0.258 E -109.3 142.3 58.0 0.258 0.0 SO4
HOH
 9.009
2.816
 O
NE
 O2
O
ARG B:55 B:166 58.0 0.258 E -111.7 142.9 NA NA NA
ARG C:55 C:166 51.0 0.227 E -114.1 140.4 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ARG A:55 A:166 59.0 0.262 E -109.1 140.6 59.0 0.262 0.0 SO4
HOH
 8.898
2.677
 O
NH2
 O2
O
ARG B:55 B:166 59.0 0.262 E -106.9 142.8 NA NA NA
ARG C:55 C:166 48.0 0.213 E -112.7 142.8 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ARG A:55 A:166 67.0 0.298 E -111.9 142.0 67.0 0.298 0.0 SO4
HOH
 8.992
2.795
 O
NE
 O2
O
ARG B:55 B:166 57.0 0.253 E -111.4 143.1 NA NA NA
ARG C:55 C:166 48.0 0.213 E -114.7 141.6 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ARG A:55 A:166 60.0 0.267 E -112.2 141.1 60.0 0.267 0.0 SO4
HOH
 9.002
2.956
 O
NE
 O2
O
ARG B:55 B:166 57.0 0.253 E -109.0 143.5 NA NA NA
ARG C:55 C:166 58.0 0.258 E -116.8 141.7 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ARG A:55 A:166 65.0 0.289 E -109.0 138.8 65.0 0.289 0.0 HOH
 2.857
 NH2
 O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ARG A:55 A:166 66.0 0.293 E -109.0 137.1 66.0 0.293 0.0 HOH
 2.960
 NH1
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ARG A:55 A:166 53.0 0.236 E -107.2 135.9 53.0 0.236 0.0 HOH
 2.943
 NE
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 ARG A:55 A:166 65.0 0.289 E -114.3 145.4 65.0 0.289 0.0 SO4
HOH
 8.908
2.742
 O
NE
 O4
O
ARG B:55 B:166 58.0 0.258 E -111.0 143.2 NA NA NA
ARG C:55 C:166 61.0 0.271 E -114.6 138.2 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:55 A:166 66.0 0.293 E -116.6 145.3 66.0 0.293 0.0 SO4
HOH
 9.203
2.915
 O
NE
 O3
O
ARG B:55 B:166 51.0 0.227 E -112.1 140.4 NA NA NA
ARG C:55 C:166 60.0 0.267 E -111.7 138.9 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:55 A:166 63.0 0.28 E -113.4 139.2 63.0 0.28 0.0 SO4
HOH
 8.915
2.532
 O
NH1
 O2
O
ARG B:55 B:166 63.0 0.28 E -113.4 137.9 NA NA NA
ARG C:55 C:166 52.0 0.231 E -116.8 143.1 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:55 A:166 68.0 0.302 E -118.9 144.2 68.0 0.302 0.0 SO4
HOH
 9.132
2.712
 O
NH1
 O2
O
ARG B:55 B:166 62.0 0.276 E -111.8 143.7 NA NA NA
ARG C:55 C:166 59.0 0.262 E -112.5 139.2 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:55 A:166 63.0 0.28 E -112.2 137.9 63.0 0.28 0.0 SO4
SO4
HOH
 8.938
6.651
2.860
 O
O
NE
 O3
O2
O
ARG B:55 B:166 64.0 0.284 E -113.3 141.4 NA NA NA
ARG C:55 C:166 62.0 0.276 E -117.2 139.9 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:55 A:166 65.0 0.289 E -117.1 141.2 65.0 0.289 0.0 SO4
HOH
 9.052
2.823
 O
NH1
 O3
O
ARG B:55 B:166 65.0 0.289 E -114.1 142.6 NA NA NA
ARG C:55 C:166 62.0 0.276 E -117.9 139.5 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:55 A:166 61.0 0.271 E -121.0 139.8 61.0 0.271 0.0 SO4
HOH
 8.989
2.753
 O
NE
 O3
O
ARG B:55 B:166 60.0 0.267 E -116.8 144.0 NA NA NA
ARG C:55 C:166 65.0 0.289 E -115.6 136.9 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ARG A:55 A:166 61.0 0.271 E -111.4 140.2 61.0 0.271 0.0 SO4
HOH
 8.949
2.846
 O
NE
 O3
O
ARG B:55 B:166 60.0 0.267 E -113.8 139.3 NA NA NA
ARG C:55 C:166 61.0 0.271 E -111.3 137.1 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 ARG A:56 A:170 44.0 0.196 B -99.8 140.8 44.0 0.196 0.0 HOH
 3.039
 NE
 O
ARG B:56 B:170 42.0 0.187 B -100.0 140.3 42.0 0.187 0.0 HOH
 3.179
 NE
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 ARG A:56 A:170 45.0 0.2 E -112.4 139.1 45.0 0.2 0.0 HOH
 6.336
 O
 O
ARG B:56 B:170 42.0 0.187 E -111.6 139.3 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 ARG B:54 B:170 51.0 0.227 E -111.8 143.3 51.0 0.227 0.0 HOH
 2.786
 NH2
 O
ARG D:54 D:170 48.0 0.213 E -107.4 136.5 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 ARG B:54 B:170 43.0 0.191 E -115.4 131.4 43.0 0.191 0.0 HOH
 3.350
 CG
 O
ARG D:54 D:170 32.0 0.142 E -111.6 145.0 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 ARG B:54 B:170 44.0 0.196 E -106.3 137.3 44.0 0.196 0.0 UDP
PG4
HOH
 9.702
7.228
3.409
 N
CG
CG
 O4
C2
O
ARG D:54 D:170 36.0 0.16 E -108.0 146.4 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 ARG B:54 B:170 44.0 0.196 E -107.4 146.4 44.0 0.196 0.0 HOH
 3.206
 CG
 O
ARG D:54 D:170 48.0 0.213 E -108.5 150.5 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 ARG B:54 B:170 43.0 0.191 E -119.9 150.2 43.0 0.191 0.0 HOH
 2.702
 NH2
 O
ARG D:54 D:170 33.0 0.147 E -118.9 141.2 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 ARG B:54 B:170 48.0 0.213 E -106.0 142.1 48.0 0.213 0.0 UDP
HOH
 9.669
3.861
 N
CG
 O4
O
ARG D:54 D:572 30.0 0.133 E -113.8 141.8 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 ARG B:54 B:170 45.0 0.2 E -103.1 139.8 45.0 0.2 0.0 HOH
 3.304
 CZ
 O
ARG D:54 D:170 45.0 0.2 E -104.7 140.7 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 ARG B:54 B:170 48.0 0.213 E -108.1 144.5 48.0 0.213 0.0 HOH
 2.829
 NH2
 O
ARG D:54 D:170 39.0 0.173 E -108.3 142.1 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 ARG A:54 A:170 38.0 0.169 B -92.7 138.2 38.0 0.169 0.0 HOH
 3.444
 NE
 O
ARG B:54 B:170 32.0 0.142 E -103.3 142.3 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 ARG B:54 B:170 47.0 0.209 E -105.8 138.0 47.0 0.209 0.0 UDP
HOH
 9.414
3.147
 N
CG
 O4
O
ARG D:54 D:170 45.0 0.2 E -103.0 136.3 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ARG A:54 A:170 39.0 0.173 E -97.3 142.1 39.0 0.173 0.0 HOH
 3.219
 CG
 O
ARG B:54 B:170 33.0 0.147 B -97.6 137.2 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ARG A:54 A:170 30.0 0.133 E -104.9 140.1 30.0 0.133 0.0 HOH
 2.859
 NE
 O
ARG B:54 B:170 36.0 0.16 B -92.2 143.4 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 ARG A:54 A:170 41.0 0.182 E -100.2 145.3 41.0 0.182 0.0 HOH
 2.848
 NH2
 O
ARG B:54 B:170 33.0 0.147 B -94.0 146.7 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 ARG B:54 B:170 47.0 0.209 E -108.3 137.8 47.0 0.209 0.0 UDP
HOH
 9.415
2.920
 N
NE
 O4
O
ARG D:54 D:170 45.0 0.2 E -101.3 137.4 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 ARG A:54 A:170 40.0 0.178 B -89.5 139.2 40.0 0.178 0.0 HOH
 4.476
 CG
 O
ARG B:54 B:170 34.0 0.151 B -94.0 137.0 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 ARG A:54 A:170 39.0 0.173 E -105.9 138.2 39.0 0.173 0.0 HOH
 3.022
 NE
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 ARG B:54 B:170 36.0 0.16 E -109.9 143.2 36.0 0.16 0.0 HOH
 2.822
 NE
 O
ARG D:54 D:170 47.0 0.209 E -108.2 139.6 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 ARG B:54 B:170 41.0 0.182 E -109.0 138.5 41.0 0.182 0.0 HOH
 2.946
 NE
 O
ARG D:54 D:170 45.0 0.2 E -103.7 138.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 ARG A:166 A:166 51.0 0.227 E -95.2 138.4