Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33135357 . T A CCDS6535.1:NM_001497.3:c.478Aat>Tat_NP_001488.2:p.160N>Y Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ASN A:39 A:160 86.0 0.537 T -82.9 -10.3 86.0 0.537 0.0 HOH
 1.992
 H
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 ASN A:35 A:160 91.0 0.569 T -84.8 -6.9 91.0 0.569 0.0 HOH
 2.091
 H
 O
ASN B:35 B:160 96.0 0.6 T -85.3 -6.1 96.0 0.6 0.0 HOH
 2.196
 H
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 ASN B:49 C:160 66.0 0.412 T -76.7 -9.5 66.0 0.412 0.0
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASN A:49 A:160 74.0 0.463 T -78.9 -2.4 74.0 0.463 0.0 SO4
HOH
 3.374
2.688
 ND2
N
 O1
O
ASN B:49 B:160 72.0 0.45 T -81.3 -10.6 NA NA NA
ASN C:49 C:160 57.0 0.356 T -79.9 -12.4 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASN A:49 A:160 69.0 0.431 T -85.0 -1.3 69.0 0.431 0.0 SO4
HOH
 3.504
2.764
 ND2
N
 O2
O
ASN B:49 B:160 68.0 0.425 T -82.2 -8.9 NA NA NA
ASN C:49 C:160 72.0 0.45 T -83.0 -8.0 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASN A:49 A:160 67.0 0.419 T -84.5 -3.2 67.0 0.419 0.0 SO4
HOH
 3.493
2.747
 CG
O
 O2
O
ASN B:49 B:160 69.0 0.431 T -80.9 -10.4 NA NA NA
ASN C:49 C:160 69.0 0.431 T -82.8 -10.5 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASN A:49 A:160 76.0 0.475 T -90.4 -3.7 76.0 0.475 0.0 SO4
HOH
 3.529
2.753
 CG
N
 O2
O
ASN B:49 B:160 72.0 0.45 T -83.1 -5.5 NA NA NA
ASN C:49 C:160 71.0 0.444 T -85.6 -7.9 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 ASN A:49 A:160 71.0 0.444 T -81.8 -2.8 71.0 0.444 0.0 SO4
HOH
 3.536
2.718
 CG
N
 O2
O
ASN B:49 B:160 63.0 0.394 T -82.6 -5.2 NA NA NA
ASN C:49 C:160 70.0 0.438 T -82.6 -8.7 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASN A:49 A:160 110.0 0.688 T -85.1 -7.2 110.0 0.688 0.0 PGE
HOH
 4.291
2.630
 ND2
OD1
 C1
O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASN A:49 A:160 111.0 0.694 T -81.3 -7.5 111.0 0.694 0.0 HOH
 2.793
 OD1
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 ASN A:49 A:160 110.0 0.688 T -82.8 -6.2 110.0 0.688 0.0 HOH
 2.848
 OD1
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 ASN A:49 A:160 71.0 0.444 T -88.8 0.1 71.0 0.444 0.0 SO4
HOH
 3.616
2.728
 CG
N
 O4
O
ASN B:49 B:160 71.0 0.444 T -79.5 -8.6 NA NA NA
ASN C:49 C:160 67.0 0.419 T -85.8 -9.2 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:49 A:160 67.0 0.419 T -84.0 -4.9 67.0 0.419 0.0 SO4
HOH
 3.660
2.531
 ND2
N
 O2
O
ASN B:49 B:160 64.0 0.4 T -77.9 -12.5 NA NA NA
ASN C:49 C:160 63.0 0.394 T -84.8 -9.1 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:49 A:160 72.0 0.45 T -88.4 -3.1 72.0 0.45 0.0 SO4
HOH
 3.694
2.643
 ND2
N
 O3
O
ASN B:49 B:160 67.0 0.419 T -81.7 -5.8 NA NA NA
ASN C:49 C:160 70.0 0.438 T -84.6 -11.1 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:49 A:160 73.0 0.456 T -83.7 -1.7 73.0 0.456 0.0 SO4
HOH
 3.753
2.763
 ND2
N
 O3
O
ASN B:49 B:160 67.0 0.419 T -86.9 -9.1 NA NA NA
ASN C:49 C:160 65.0 0.406 T -85.2 -8.4 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:49 A:160 75.0 0.469 T -86.7 -4.0 75.0 0.469 0.0 SO4
SO4
HOH
 3.695
6.920
2.656
 ND2
O
N
 O4
O1
O
ASN B:49 B:160 67.0 0.419 T -83.1 -9.0 NA NA NA
ASN C:49 C:160 69.0 0.431 T -84.4 -7.3 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:49 A:160 70.0 0.438 T -88.9 -4.6 70.0 0.438 0.0 SO4
HOH
 3.436
2.671
 ND2
N
 O4
O
ASN B:49 B:160 71.0 0.444 T -81.2 -9.7 NA NA NA
ASN C:49 C:160 59.0 0.369 T -87.0 -8.0 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:49 A:160 74.0 0.463 T -86.9 -4.1 74.0 0.463 0.0 SO4
HOH
 3.388
2.841
 ND2
N
 O2
O
ASN B:49 B:160 64.0 0.4 T -83.1 -7.6 NA NA NA
ASN C:49 C:160 68.0 0.425 T -82.7 -12.3 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 ASN A:49 A:160 74.0 0.463 T -82.7 -8.4 74.0 0.463 0.0 SO4
HOH
 3.416
2.773
 ND2
N
 O2
O
ASN B:49 B:160 66.0 0.412 T -80.0 -8.9 NA NA NA
ASN C:49 C:160 70.0 0.438 T -90.7 -14.5 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 LYS A:50 A:164 116.0 0.58 T -68.3 -8.1 116.0 0.58 0.0 HOH
 5.575
 NZ
 O
LYS B:50 B:164 105.0 0.525 T -66.1 -7.3 105.0 0.525 0.0 HOH
 5.180
 NZ
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 LYS A:50 A:164 85.0 0.425 T -79.5 -3.5 85.0 0.425 0.0 HOH
 3.925
 O
 O
LYS B:50 B:164 89.0 0.445 T -78.4 -5.8 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 LYS B:48 B:164 85.0 0.425 T -79.9 -16.6 85.0 0.425 0.0 HOH
 2.888
 N
 O
LYS D:48 D:164 119.0 0.595 T -76.7 -14.5 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 LYS B:48 B:164 98.0 0.49 T -76.1 -16.5 98.0 0.49 0.0 HOH
 2.975
 NZ
 O
LYS D:48 D:164 110.0 0.55 T -75.0 -10.3 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 LYS B:48 B:164 97.0 0.485 T -76.4 -18.7 97.0 0.485 0.0 HOH
 2.765
 NZ
 O
LYS D:48 D:164 111.0 0.555 T -79.7 -8.9 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 LYS B:48 B:164 94.0 0.47 T -78.8 -14.5 94.0 0.47 0.0 HOH
 2.687
 N
 O
LYS D:48 D:164 99.0 0.495 T -74.9 -11.3 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 LYS B:48 B:164 89.0 0.445 T -84.2 -12.9 89.0 0.445 0.0 HOH
 2.773
 N
 O
LYS D:48 D:164 98.0 0.49 T -70.1 -6.0 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 LYS B:48 B:164 85.0 0.425 T -81.1 -21.2 85.0 0.425 0.0 HOH
 2.729
 NZ
 O
LYS D:48 D:566 105.0 0.525 T -68.5 -18.4 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 LYS B:48 B:164 103.0 0.515 T -72.0 -20.0 103.0 0.515 0.0 HOH
 2.702
 NZ
 O
LYS D:48 D:164 104.0 0.52 T -73.8 -14.3 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 LYS B:48 B:164 91.0 0.455 T -80.1 -18.0 91.0 0.455 0.0 HOH
 2.831
 N
 O
LYS D:48 D:164 101.0 0.505 T -82.5 -9.2 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 LYS A:48 A:164 123.0 0.615 T -79.2 -26.7 123.0 0.615 0.0 HOH
 2.717
 N
 O
LYS B:48 B:164 120.0 0.6 T -71.1 -21.5 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 LYS B:48 B:164 100.0 0.5 T -77.6 -11.8 100.0 0.5 0.0 HOH
 2.880
 CE
 O
LYS D:48 D:164 95.0 0.475 T -76.7 -13.3 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 LYS A:48 A:164 103.0 0.515 T -74.1 -16.9 103.0 0.515 0.0 HOH
 6.549
 C
 O
LYS B:48 B:164 134.0 0.67 T -81.2 -11.4 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 LYS A:48 A:164 99.0 0.495 T -77.9 -7.7 99.0 0.495 0.0 HOH
 2.558
 N
 O
LYS B:48 B:164 106.0 0.53 T -74.2 -9.7 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 LYS A:48 A:164 89.0 0.445 T -71.3 -12.4 89.0 0.445 0.0 HOH
 2.908
 NZ
 O
LYS B:48 B:164 88.0 0.44 T -66.6 -21.0 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 LYS B:48 B:164 96.0 0.48 T -80.9 -10.9 96.0 0.48 0.0 HOH
 2.539
 O
 O
LYS D:48 D:164 98.0 0.49 T -75.3 -15.1 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 LYS A:48 A:164 112.0 0.56 T -86.3 -13.0 112.0 0.56 0.0 SO4
HOH
 7.386
3.028
 CG
N
 O3
O
LYS B:48 B:164 120.0 0.6 T -86.5 -6.7 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 LYS A:48 A:164 122.0 0.61 T -81.9 -5.6 122.0 0.61 0.0 HOH
 2.739
 N
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 LYS B:48 B:164 103.0 0.515 T -58.3 -24.2 103.0 0.515 0.0 HOH
 6.442
 C
 O
LYS D:48 D:164 103.0 0.515 T -85.5 -15.1 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 LYS B:48 B:164 102.0 0.51 T -76.6 -10.6 102.0 0.51 0.0 HOH
 2.924
 N
 O
LYS D:48 D:164 99.0 0.495 T -77.6 -10.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 ASN A:160 A:160 57.0 0.356 T -83.0 -21.2