Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33135375 . C A CCDS6535.1:NM_001497.3:c.460Gtg>Ttg_NP_001488.2:p.154V>L Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 VAL A:33 A:154 2.0 0.013 H -55.9 -42.5 2.0 0.013 0.0 HOH
 2.839
 HG13
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 VAL A:29 A:154 2.0 0.013 H -59.6 -39.6 2.0 0.013 0.0 HOH
 2.686
 HG13
 O
VAL B:29 B:154 1.0 0.006 H -60.2 -39.7 1.0 0.006 0.0 HOH
 6.183
 HB
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 VAL B:43 C:154 2.0 0.013 H -61.0 -29.3 2.0 0.013 0.0
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 VAL A:43 A:154 2.0 0.013 H -60.0 -42.2 2.0 0.013 0.0 HOH
 3.769
 CG1
 O
VAL B:43 B:154 2.0 0.013 H -59.3 -39.1 NA NA NA
VAL C:43 C:154 3.0 0.019 H -58.3 -35.9 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 VAL A:43 A:154 2.0 0.013 H -54.7 -41.8 2.0 0.013 0.0 HOH
 3.738
 CG1
 O
VAL B:43 B:154 3.0 0.019 H -62.4 -41.2 NA NA NA
VAL C:43 C:154 3.0 0.019 H -57.5 -37.9 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 VAL A:43 A:154 3.0 0.019 H -60.6 -40.3 3.0 0.019 0.0 HOH
 3.947
 CG1
 O
VAL B:43 B:154 2.0 0.013 H -65.2 -39.8 NA NA NA
VAL C:43 C:154 3.0 0.019 H -59.4 -38.8 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 VAL A:43 A:154 1.0 0.006 H -57.5 -42.6 1.0 0.006 0.0 HOH
 3.837
 CG1
 O
VAL B:43 B:154 3.0 0.019 H -60.4 -42.7 NA NA NA
VAL C:43 C:154 3.0 0.019 H -58.6 -40.6 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 VAL A:43 A:154 2.0 0.013 H -54.6 -43.9 2.0 0.013 0.0 DIO
HOH
 3.854
3.983
 CG2
CG1
 C1
O
VAL B:43 B:154 2.0 0.013 H -59.6 -42.6 NA NA NA
VAL C:43 C:154 3.0 0.019 H -58.8 -38.2 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 VAL A:43 A:154 3.0 0.019 H -60.9 -43.2 3.0 0.019 0.0 PGE
HOH
 7.535
3.747
 O
CG1
 O4
O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 VAL A:43 A:154 2.0 0.013 H -60.8 -41.9 2.0 0.013 0.0 HOH
 3.603
 CG1
 O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 VAL A:43 A:154 3.0 0.019 H -58.7 -46.3 3.0 0.019 0.0 HOH
 3.639
 CG1
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 VAL A:43 A:154 2.0 0.013 H -60.2 -39.3 2.0 0.013 0.0 HOH
 3.730
 CG1
 O
VAL B:43 B:154 2.0 0.013 H -61.3 -39.7 NA NA NA
VAL C:43 C:154 4.0 0.026 H -56.9 -35.8 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:43 A:154 3.0 0.019 H -53.5 -42.8 3.0 0.019 0.0 HOH
 3.896
 CG1
 O
VAL B:43 B:154 2.0 0.013 H -57.8 -44.7 NA NA NA
VAL C:43 C:154 3.0 0.019 H -63.9 -39.1 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:43 A:154 3.0 0.019 H -58.5 -42.7 3.0 0.019 0.0 SO4
HOH
 3.044
3.767
 CG2
CG1
 O2
O
VAL B:43 B:154 3.0 0.019 H -61.6 -40.3 NA NA NA
VAL C:43 C:154 3.0 0.019 H -55.5 -38.8 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:43 A:154 2.0 0.013 H -56.8 -40.1 2.0 0.013 0.0 HOH
 3.758
 CG1
 O
VAL B:43 B:154 3.0 0.019 H -59.6 -41.7 NA NA NA
VAL C:43 C:154 3.0 0.019 H -55.5 -38.2 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:43 A:154 3.0 0.019 H -56.7 -43.8 3.0 0.019 0.0 HOH
 3.879
 CG1
 O
VAL B:43 B:154 2.0 0.013 H -55.4 -44.2 NA NA NA
VAL C:43 C:154 3.0 0.019 H -50.9 -42.1 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:43 A:154 2.0 0.013 H -52.5 -46.2 2.0 0.013 0.0 HOH
 3.615
 CG1
 O
VAL B:43 B:154 3.0 0.019 H -64.7 -41.3 NA NA NA
VAL C:43 C:154 4.0 0.026 H -59.5 -39.2 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:43 A:154 3.0 0.019 H -54.5 -40.6 3.0 0.019 0.0 HOH
 3.856
 CG1
 O
VAL B:43 B:154 3.0 0.019 H -54.6 -45.2 NA NA NA
VAL C:43 C:154 4.0 0.026 H -51.3 -34.6 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 VAL A:43 A:154 3.0 0.019 H -52.2 -46.6 3.0 0.019 0.0 HOH
 3.748
 CG1
 O
VAL B:43 B:154 3.0 0.019 H -57.6 -43.9 NA NA NA
VAL C:43 C:154 3.0 0.019 H -49.8 -36.6 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 VAL A:44 A:158 0.0 0.0 H -57.1 -37.9 0.0 0.0 0.0 HOH
 9.317
 CG1
 O
VAL B:44 B:158 0.0 0.0 H -65.0 -37.2 0.0 0.0 0.0 HOH
 7.158
 O
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 ILE A:44 A:158 2.0 0.011 H -62.9 -35.4 2.0 0.011 0.0 HOH
 9.835
 CG2
 O
ILE B:44 B:158 1.0 0.006 H -67.0 -32.7 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 VAL B:42 B:158 1.0 0.006 H -55.5 -37.5 1.0 0.006 0.0 HOH
 5.057
 N
 O
VAL D:42 D:158 1.0 0.006 H -63.2 -38.3 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 VAL B:42 B:158 3.0 0.019 H -54.2 -43.5 3.0 0.019 0.0 HOH
 5.364
 CG2
 O
VAL D:42 D:158 1.0 0.006 H -49.6 -52.7 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 VAL B:42 B:158 2.0 0.013 H -65.6 -38.9 2.0 0.013 0.0 UDP
HOH
 7.276
3.800
 CG1
CG1
 O4
O
VAL D:42 D:158 1.0 0.006 H -54.4 -47.5 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 VAL B:42 B:158 3.0 0.019 H -52.9 -46.0 3.0 0.019 0.0 HOH
 4.091
 CG1
 O
VAL D:42 D:158 3.0 0.019 H -54.8 -40.6 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 VAL B:42 B:158 1.0 0.006 H -46.3 -45.5 1.0 0.006 0.0 HOH
 3.876
 CG1
 O
VAL D:42 D:158 7.0 0.045 H -32.4 -39.0 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 VAL B:42 B:158 1.0 0.006 H -74.3 -38.4 1.0 0.006 0.0 UDP
HOH
 7.175
3.673
 CB
CG1
 O4
O
VAL D:42 D:560 1.0 0.006 H -55.3 -41.1 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 VAL B:42 B:158 2.0 0.013 H -56.3 -43.2 2.0 0.013 0.0 HOH
 3.618
 CG1
 O
VAL D:42 D:158 1.0 0.006 H -61.0 -40.2 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 VAL B:42 B:158 1.0 0.006 H -53.5 -43.7 1.0 0.006 0.0 HOH
 3.976
 CG1
 O
VAL D:42 D:158 1.0 0.006 H -62.5 -38.9 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 VAL A:42 A:158 0.0 0.0 H -52.1 -46.8 0.0 0.0 0.0 DIO
HOH
 8.002
3.353
 CB
CG1
 O1'
O
VAL B:42 B:158 2.0 0.013 H -68.8 -46.7 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 VAL B:42 B:158 1.0 0.006 H -47.8 -46.2 1.0 0.006 0.0 UDP
HOH
 7.286
3.883
 CG1
CG1
 O4
O
VAL D:42 D:158 1.0 0.006 H -66.5 -38.5 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 VAL A:42 A:158 2.0 0.013 H -58.7 -46.2 2.0 0.013 0.0 HOH
 4.256
 CG1
 O
VAL B:42 B:158 2.0 0.013 H -63.6 -42.2 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 VAL A:42 A:158 1.0 0.006 H -57.5 -48.9 1.0 0.006 0.0 HOH
 3.815
 CG1
 O
VAL B:42 B:158 2.0 0.013 H -59.3 -45.4 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 VAL A:42 A:158 1.0 0.006 H -58.7 -48.1 1.0 0.006 0.0 HOH
 4.146
 CG1
 O
VAL B:42 B:158 2.0 0.013 H -61.4 -45.5 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 VAL B:42 B:158 3.0 0.019 H -52.7 -44.3 3.0 0.019 0.0 UDP
HOH
 7.348
3.859
 CB
CG1
 O4
O
VAL D:42 D:158 0.0 0.0 H -64.9 -38.1 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 VAL A:42 A:158 1.0 0.006 H -59.5 -44.0 1.0 0.006 0.0 HOH
 3.503
 CG1
 O
VAL B:42 B:158 0.0 0.0 H -57.0 -36.7 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 VAL A:42 A:158 0.0 0.0 H -66.3 -43.7 0.0 0.0 0.0 HOH
 4.198
 CG1
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 VAL B:42 B:158 2.0 0.013 H -50.2 -44.5 2.0 0.013 0.0 HOH
 4.717
 CG2
 O
VAL D:42 D:158 2.0 0.013 H -62.1 -32.5 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 VAL B:42 B:158 1.0 0.006 H -62.3 -38.9 1.0 0.006 0.0 HOH
 3.618
 CG1
 O
VAL D:42 D:158 1.0 0.006 H -61.9 -41.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 VAL A:154 A:154 3.0 0.019 H -60.3 -41.2